CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G11170.1	Thale cress	cytosol	83.5	97.19
CDX70383	Canola	cytosol	86.92	96.64
CDX85725	Canola	cytosol	84.91	95.48
CDY51112	Canola	cytosol	83.9	94.77
PGSC0003DMT400052757	Potato	cytosol	79.48	92.29
PGSC0003DMT400053566	Potato	cytosol	79.28	92.27
VIT_09s0002g06660.t01	Wine grape	cytosol	78.47	91.12
Solyc06g066060.2.1	Tomato	nucleus	74.65	90.49
KRH47464	Soybean	nucleus	76.46	89.2
KRH44441	Soybean	cytosol, nucleus	76.46	89.2
KXG22711	Sorghum	cytosol	76.46	88.58
CDX85726	Canola	cytosol	87.32	88.57
KXG32708	Sorghum	cytosol	76.26	88.55
TraesCS1B01G477500.1	Wheat	cytosol	76.46	88.17
TraesCS3B01G224400.1	Wheat	cytosol	75.86	88.08
TraesCS3D01G204400.1	Wheat	cytosol	75.65	87.85
CDX69778	Canola	cytosol	87.32	87.68
AT5G11200.2	Thale cress	cytosol	85.71	87.65
TraesCS1A01G443400.1	Wheat	cytosol	76.46	87.56
TraesCS1D01G451300.1	Wheat	cytosol	74.45	87.47
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	75.65	87.04
Os01t0549700-01	Rice	cytosol, plastid	75.45	86.81
TraesCS3A01G200100.1	Wheat	cytosol	75.25	85.78
VIT_04s0008g05330.t01	Wine grape	cytosol	78.67	85.56
CDX69777	Canola	cytosol, nucleus, plasma membrane	89.94	85.47
CDY71952	Canola	cytosol	71.63	85.37
GSMUA_Achr8P05380_001	Banana	cytosol	78.87	84.67
CDY51111	Canola	cytosol	41.25	82.33
Solyc08g061000.2.1	Tomato	nucleus	79.28	81.24
HORVU1Hr1G095100.5	Barley	cytosol	75.05	79.53
Zm00001d009761_P004	Maize	cytosol	77.06	78.32
Bra006091.1-P	Field mustard	cytosol	80.08	75.95
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	70.22	70.08
Zm00001d011149_P002	Maize	cytosol	21.73	65.06
Zm00001d011150_P005	Maize	cytosol	58.55	62.85
CDY56825	Canola	cytosol	27.97	60.96
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	26.96	44.82
CDY37498	Canola	cytosol, mitochondrion	8.05	43.48
CDY26130	Canola	cytosol	8.45	41.58
CDY67069	Canola	cytosol	8.05	39.6
CDY45702	Canola	cytosol	15.29	36.89
CDY33073	Canola	cytosol	29.98	36.16
CDY24057	Canola	cytosol	29.98	36.16
CDY39079	Canola	cytosol	29.78	35.92
CDY32586	Canola	cytosol	27.16	35.71
CDY02469	Canola	cytosol	29.58	35.68
CDY54061	Canola	cytosol	23.34	35.58
CDY10607	Canola	cytosol	29.38	35.52
CDY08220	Canola	cytosol	29.38	35.44
CDY72259	Canola	cytosol	15.49	34.68
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.38	34.19
CDY55205	Canola	cytosol	28.77	33.81
CDX97528	Canola	cytosol	28.77	33.65
CDX82505	Canola	cytosol	28.97	33.64
CDY22577	Canola	cytosol	10.06	33.56
CDX82280	Canola	cytosol	27.36	33.33
CDY22956	Canola	cytosol	27.36	33.33
CDX75739	Canola	cytosol	29.18	33.26
CDY24617	Canola	cytosol	27.16	33.09
CDY33416	Canola	cytosol	27.16	33.09
CDY51692	Canola	cytosol	27.16	33.09
CDY42205	Canola	cytosol	27.16	33.09
CDY58940	Canola	cytosol	26.16	32.18
CDY03623	Canola	cytosol	25.96	31.93
CDY11154	Canola	cytosol	12.27	30.2
CDY07205	Canola	cytosol	29.38	29.74
CDY48935	Canola	cytosol, plastid	28.37	29.68
CDY58787	Canola	cytosol	28.77	29.67
CDX71756	Canola	cytosol	28.37	29.44
CDY51147	Canola	cytosol	29.38	29.44
CDX91901	Canola	cytosol	29.18	28.94
CDY54037	Canola	cytosol	15.29	28.46
CDY37067	Canola	cytosol	28.77	28.04
CDX74342	Canola	cytosol	28.97	28.02
CDY27357	Canola	cytosol, plastid	28.57	27.9
CDX67556	Canola	cytosol	25.75	27.12
CDY53867	Canola	cytosol	22.94	27.01
CDX95397	Canola	cytosol	26.56	26.72
CDX76225	Canola	cytosol	26.56	26.61
CDY13319	Canola	cytosol	26.16	26.53
CDX72939	Canola	mitochondrion, nucleus	22.74	24.25
CDY47205	Canola	plastid	18.51	19.25
CDY02574	Canola	plastid	18.51	19.25
CDY68148	Canola	nucleus	22.94	15.43
CDY49860	Canola	cytosol	2.21	8.8

Protein Annotations

MapMan:16.11.1.3	Gene3D:3.40.50.300	GO:A0A078CNR8	EnsemblPlants:CDX78412	ProteinID:CDX78412	ProteinID:CDX78412.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00129796001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EE7087	SEG:seg	:	:	:

Description

BnaA03g03240D

Coordinates

chrLK031815:-:685184..688795

Molecular Weight (calculated)

56501.1 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.203

Length

497 amino acids

Sequence
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKYLSVFFE LYSTYKRFFV QHECIPQAIL
101: GMDVICQAKS GMGKTAVFVL STLQQIEPTP GQVSALILCH TRELAYQICN EFVRFSTYLP DTKVSVFYGG VNNKIHKELL KNECPHIVVG TPGRVLGLAR
201: DKDLSLKNVR HFILDECDKM LESLDMRRDV QEIFKMTPHD KQVMMFSATL SKEIRPVCKK FMQDFCSLEP SGTRDLPFDP WKRGLNPIMT WVVSLLFRAI
301: LIIEDLNLVD EDLSLGPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR AGELNKLLIE CNFPSICIHS GMSQEERLTH
401: YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV LNQVQDRFEV DIKELPEQID TSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.