Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82505 | Canola | cytosol | 95.18 | 96.96 |
| CDX97528 | Canola | cytosol | 92.43 | 94.82 |
| CDY55205 | Canola | cytosol | 91.74 | 94.56 |
| CDY39079 | Canola | cytosol | 88.07 | 93.2 |
| AT3G13920.5 | Thale cress | cytosol | 89.45 | 93.08 |
| CDY10607 | Canola | cytosol | 87.61 | 92.94 |
| CDY02469 | Canola | cytosol | 87.61 | 92.72 |
| CDY08220 | Canola | cytosol | 86.93 | 91.99 |
| Solyc12g095990.1.1 | Tomato | nucleus | 86.01 | 90.8 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 81.88 | 90.61 |
| PGSC0003DMT400075339 | Potato | cytosol | 85.78 | 90.56 |
| CDY72259 | Canola | cytosol | 46.1 | 90.54 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 85.32 | 90.07 |
| PGSC0003DMT400021166 | Potato | cytosol | 85.32 | 90.07 |
| PGSC0003DMT400075336 | Potato | cytosol | 84.63 | 90.0 |
| CDY24057 | Canola | cytosol | 84.63 | 89.56 |
| CDY33073 | Canola | cytosol | 84.4 | 89.32 |
| CDY67069 | Canola | cytosol | 20.64 | 89.11 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 84.17 | 88.86 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 83.94 | 88.62 |
| CDY32586 | Canola | cytosol | 76.61 | 88.36 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 82.57 | 84.31 |
| CDY26130 | Canola | cytosol | 18.81 | 81.19 |
| CDY37498 | Canola | cytosol, mitochondrion | 16.97 | 80.43 |
| CDY11154 | Canola | cytosol | 36.24 | 78.22 |
| CDY54037 | Canola | cytosol | 40.37 | 65.92 |
| CDY53867 | Canola | cytosol | 61.93 | 63.98 |
| CDX82280 | Canola | cytosol | 55.05 | 58.82 |
| CDY51692 | Canola | cytosol | 55.05 | 58.82 |
| CDY24617 | Canola | cytosol | 55.05 | 58.82 |
| CDY42205 | Canola | cytosol | 55.05 | 58.82 |
| CDY33416 | Canola | cytosol | 55.05 | 58.82 |
| CDY22956 | Canola | cytosol | 54.82 | 58.58 |
| CDX72939 | Canola | mitochondrion, nucleus | 61.01 | 57.08 |
| CDY22577 | Canola | cytosol | 19.27 | 56.38 |
| CDY58940 | Canola | cytosol | 49.54 | 53.47 |
| CDY03623 | Canola | cytosol | 49.31 | 53.22 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 49.54 | 51.31 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 33.49 | 47.56 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 50.69 | 40.18 |
| CDY54061 | Canola | cytosol | 28.9 | 38.65 |
| CDY45702 | Canola | cytosol | 17.43 | 36.89 |
| CDY68148 | Canola | nucleus | 61.7 | 36.4 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 48.85 | 33.28 |
| CDX85725 | Canola | cytosol | 33.26 | 32.81 |
| CDY51112 | Canola | cytosol | 33.03 | 32.73 |
| CDX70383 | Canola | cytosol | 33.26 | 32.44 |
| CDY48935 | Canola | cytosol, plastid | 34.4 | 31.58 |
| CDY71952 | Canola | cytosol | 29.82 | 31.18 |
| CDY58787 | Canola | cytosol | 34.4 | 31.12 |
| CDX71756 | Canola | cytosol | 34.17 | 31.11 |
| CDY07205 | Canola | cytosol | 34.17 | 30.35 |
| CDY51147 | Canola | cytosol | 34.17 | 30.04 |
| CDX67556 | Canola | cytosol | 32.34 | 29.87 |
| CDX91901 | Canola | cytosol | 33.72 | 29.34 |
| CDX85726 | Canola | cytosol | 32.8 | 29.18 |
| CDX78412 | Canola | cytosol | 33.26 | 29.18 |
| CDX69778 | Canola | cytosol | 33.03 | 29.09 |
| CDY37067 | Canola | cytosol | 33.95 | 29.02 |
| CDY27357 | Canola | cytosol, plastid | 33.72 | 28.88 |
| CDY13319 | Canola | cytosol | 32.11 | 28.57 |
| CDX76225 | Canola | cytosol | 32.34 | 28.43 |
| CDX74342 | Canola | cytosol | 33.49 | 28.4 |
| CDX95397 | Canola | cytosol | 32.11 | 28.34 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 33.03 | 27.53 |
| OQU84655 | Sorghum | cytosol | 46.56 | 26.54 |
| CDY51111 | Canola | cytosol | 15.14 | 26.51 |
| Os02t0221300-01 | Rice | cytosol | 50.69 | 25.09 |
| CDY56825 | Canola | cytosol | 13.07 | 25.0 |
| Zm00001d016350_P001 | Maize | vacuole | 27.98 | 24.21 |
| CDY02574 | Canola | plastid | 25.23 | 23.01 |
| CDY47205 | Canola | plastid | 25.0 | 22.8 |
| Zm00001d016351_P002 | Maize | nucleus | 44.72 | 21.86 |
| KXG29825 | Sorghum | cytosol | 42.89 | 21.2 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 13.99 | 20.4 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 51.61 | 17.66 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 52.06 | 16.89 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 50.46 | 16.48 |
| CDY49860 | Canola | cytosol | 3.21 | 11.2 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078CI46 | EnsemblPlants:CDX75739 | ProteinID:CDX75739 | ProteinID:CDX75739.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00123661001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF47B7 | : | : | : |
Description
BnaC03g38220D
Coordinates
chrLK031805:-:284905..289038
Molecular Weight (calculated)
49620.8 Da
IEP (calculated)
5.781
GRAVY (calculated)
-0.199
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDEVHDS FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCQGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFTLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD SIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRG
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INYDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERMF CLLTLLICCE
401: REKKFADVTG EERFFLYTFN NLKKETIISL ISFYNF
101: LDFTLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD SIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRG
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INYDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERMF CLLTLLICCE
401: REKKFADVTG EERFFLYTFN NLKKETIISL ISFYNF
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML CLRTWPICCE
401: GRKEVGSVAV FALPY
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML CLRTWPICCE
401: GRKEVGSVAV FALPY
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.