Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26130 | Canola | cytosol | 24.51 | 100.0 |
| Bra014365.1-P | Field mustard | cytosol | 99.76 | 99.76 |
| CDY37498 | Canola | cytosol, mitochondrion | 22.09 | 98.91 |
| CDY02469 | Canola | cytosol | 98.54 | 98.54 |
| CDY10607 | Canola | cytosol | 98.3 | 98.54 |
| CDY39079 | Canola | cytosol | 97.09 | 97.09 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 90.78 | 94.92 |
| PGSC0003DMT400021166 | Potato | cytosol | 94.66 | 94.43 |
| PGSC0003DMT400075339 | Potato | cytosol | 94.66 | 94.43 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 94.66 | 94.43 |
| Solyc12g095990.1.1 | Tomato | nucleus | 94.17 | 93.95 |
| PGSC0003DMT400075336 | Potato | cytosol | 93.45 | 93.9 |
| CDY24057 | Canola | cytosol | 93.45 | 93.45 |
| CDY33073 | Canola | cytosol | 92.96 | 92.96 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 92.72 | 92.49 |
| CDY32586 | Canola | cytosol | 84.47 | 92.06 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 91.99 | 91.77 |
| CDY55205 | Canola | cytosol | 91.5 | 89.13 |
| CDX97528 | Canola | cytosol | 91.26 | 88.47 |
| CDX82505 | Canola | cytosol | 91.75 | 88.32 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 91.5 | 88.29 |
| CDY67069 | Canola | cytosol | 21.36 | 87.13 |
| CDY72259 | Canola | cytosol | 46.84 | 86.94 |
| CDX75739 | Canola | cytosol | 91.99 | 86.93 |
| CDY11154 | Canola | cytosol | 38.11 | 77.72 |
| CDY54037 | Canola | cytosol | 42.23 | 65.17 |
| CDY53867 | Canola | cytosol | 65.53 | 63.98 |
| CDY24617 | Canola | cytosol | 60.44 | 61.03 |
| CDX82280 | Canola | cytosol | 60.44 | 61.03 |
| CDY33416 | Canola | cytosol | 60.44 | 61.03 |
| CDY51692 | Canola | cytosol | 60.44 | 61.03 |
| CDY42205 | Canola | cytosol | 60.44 | 61.03 |
| CDY22956 | Canola | cytosol | 60.19 | 60.78 |
| CDY22577 | Canola | cytosol | 20.63 | 57.05 |
| CDX72939 | Canola | mitochondrion, nucleus | 64.08 | 56.65 |
| CDY58940 | Canola | cytosol | 54.61 | 55.69 |
| CDY03623 | Canola | cytosol | 54.37 | 55.45 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 55.1 | 53.92 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 36.16 | 48.53 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 56.55 | 42.36 |
| CDY54061 | Canola | cytosol | 30.83 | 38.96 |
| CDY45702 | Canola | cytosol | 18.69 | 37.38 |
| CDY68148 | Canola | nucleus | 64.81 | 36.13 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 55.1 | 35.47 |
| CDY51112 | Canola | cytosol | 35.44 | 33.18 |
| CDX85725 | Canola | cytosol | 35.44 | 33.03 |
| CDX70383 | Canola | cytosol | 35.44 | 32.66 |
| CDY48935 | Canola | cytosol, plastid | 36.89 | 32.0 |
| CDY71952 | Canola | cytosol | 32.28 | 31.89 |
| CDX71756 | Canola | cytosol | 36.65 | 31.52 |
| CDY07205 | Canola | cytosol | 37.14 | 31.16 |
| CDY58787 | Canola | cytosol | 36.41 | 31.12 |
| CDY51147 | Canola | cytosol | 37.14 | 30.85 |
| CDX91901 | Canola | cytosol | 36.65 | 30.14 |
| CDX85726 | Canola | cytosol | 35.44 | 29.8 |
| CDX69778 | Canola | cytosol | 35.68 | 29.7 |
| CDX67556 | Canola | cytosol | 33.74 | 29.45 |
| CDX78412 | Canola | cytosol | 35.44 | 29.38 |
| CDY37067 | Canola | cytosol | 36.16 | 29.22 |
| CDX74342 | Canola | cytosol | 36.41 | 29.18 |
| CDY27357 | Canola | cytosol, plastid | 35.92 | 29.08 |
| CDY51111 | Canola | cytosol | 16.99 | 28.11 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 35.68 | 28.11 |
| CDX76225 | Canola | cytosol | 33.74 | 28.02 |
| CDY13319 | Canola | cytosol | 33.25 | 27.96 |
| CDX95397 | Canola | cytosol | 33.5 | 27.94 |
| OQU84655 | Sorghum | cytosol | 51.46 | 27.71 |
| Os02t0221300-01 | Rice | cytosol | 55.1 | 25.77 |
| CDY56825 | Canola | cytosol | 13.35 | 24.12 |
| Zm00001d016350_P001 | Maize | vacuole | 28.88 | 23.61 |
| CDY02574 | Canola | plastid | 26.94 | 23.22 |
| CDY47205 | Canola | plastid | 26.7 | 23.01 |
| Zm00001d016351_P002 | Maize | nucleus | 47.82 | 22.09 |
| KXG29825 | Sorghum | cytosol | 47.09 | 22.0 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 15.05 | 20.74 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 57.52 | 18.6 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 57.77 | 17.71 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 56.31 | 17.38 |
| CDY49860 | Canola | cytosol | 3.88 | 12.8 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078F164 | UniProt:A0A078F164 | EnsemblPlants:CDY08220 | ProteinID:CDY08220 |
| ProteinID:CDY08220.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00125537001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0001B63A80 | : | : | : | : | : |
Description
BnaA05g13990DBnaA05g13990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F164]
Coordinates
chrLK031984:+:181828..183919
Molecular Weight (calculated)
46754.3 Da
IEP (calculated)
5.363
GRAVY (calculated)
-0.224
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPEGTQ FDTRQFDQRL NEVLEGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRSD SIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDFSLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRSD SIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERML FDIQKFYNVV
401: VEELPSNVAD LL
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.