Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014267.1-P | Field mustard | cytosol | 99.26 | 99.26 |
| CDY58940 | Canola | cytosol | 99.26 | 99.26 |
| AT1G51380.1 | Thale cress | cytosol | 89.6 | 92.35 |
| CDY22577 | Canola | cytosol | 30.2 | 81.88 |
| CDY24617 | Canola | cytosol | 76.24 | 75.49 |
| CDY42205 | Canola | cytosol | 75.99 | 75.25 |
| CDY33416 | Canola | cytosol | 75.99 | 75.25 |
| CDY22956 | Canola | cytosol | 75.99 | 75.25 |
| CDX82280 | Canola | cytosol | 75.74 | 75.0 |
| CDY51692 | Canola | cytosol | 75.74 | 75.0 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 70.54 | 73.45 |
| KRH12197 | Soybean | nucleus | 72.52 | 72.17 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 69.8 | 72.12 |
| KRH37217 | Soybean | endoplasmic reticulum | 72.52 | 71.99 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 73.76 | 71.81 |
| Os01t0639100-01 | Rice | nucleus | 71.53 | 71.53 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 71.29 | 71.29 |
| EES07819 | Sorghum | cytosol | 70.54 | 70.02 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 70.3 | 69.78 |
| PGSC0003DMT400019783 | Potato | cytosol | 70.54 | 69.68 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 63.12 | 69.11 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 69.55 | 68.2 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 68.32 | 67.81 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 69.06 | 67.55 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 69.06 | 67.55 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 64.85 | 67.53 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 67.57 | 67.41 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 68.56 | 67.23 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 52.97 | 64.26 |
| Zm00001d018542_P006 | Maize | cytosol | 70.05 | 63.88 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 22.28 | 58.82 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 22.28 | 58.82 |
| CDY37498 | Canola | cytosol, mitochondrion | 13.37 | 58.7 |
| CDY26130 | Canola | cytosol | 14.11 | 56.44 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 22.28 | 55.56 |
| CDY08220 | Canola | cytosol | 55.45 | 54.37 |
| CDY32586 | Canola | cytosol | 50.49 | 53.97 |
| CDY39079 | Canola | cytosol | 54.95 | 53.88 |
| CDY10607 | Canola | cytosol | 54.7 | 53.77 |
| CDY02469 | Canola | cytosol | 54.7 | 53.64 |
| CDY33073 | Canola | cytosol | 53.71 | 52.67 |
| CDY24057 | Canola | cytosol | 53.47 | 52.43 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.7 | 51.76 |
| CDY55205 | Canola | cytosol | 53.96 | 51.54 |
| CDX97528 | Canola | cytosol | 53.96 | 51.29 |
| CDX82505 | Canola | cytosol | 53.22 | 50.23 |
| CDX75739 | Canola | cytosol | 53.22 | 49.31 |
| CDY67069 | Canola | cytosol | 11.88 | 47.52 |
| CDY72259 | Canola | cytosol | 24.01 | 43.69 |
| CDY54037 | Canola | cytosol | 26.98 | 40.82 |
| CDY11154 | Canola | cytosol | 20.3 | 40.59 |
| CDY53867 | Canola | cytosol | 39.6 | 37.91 |
| CDY45702 | Canola | cytosol | 17.82 | 34.95 |
| CDY54061 | Canola | cytosol | 27.97 | 34.66 |
| CDX72939 | Canola | mitochondrion, nucleus | 39.11 | 33.91 |
| CDY51112 | Canola | cytosol | 31.93 | 29.32 |
| CDX85725 | Canola | cytosol | 31.93 | 29.19 |
| CDX70383 | Canola | cytosol | 31.93 | 28.86 |
| CDY71952 | Canola | cytosol | 29.7 | 28.78 |
| CDY07205 | Canola | cytosol | 33.91 | 27.9 |
| CDX91901 | Canola | cytosol | 34.41 | 27.74 |
| CDY51147 | Canola | cytosol | 33.91 | 27.62 |
| CDY48935 | Canola | cytosol, plastid | 32.18 | 27.37 |
| CDX71756 | Canola | cytosol | 32.43 | 27.35 |
| CDX67556 | Canola | cytosol | 31.68 | 27.12 |
| CDY58787 | Canola | cytosol | 32.18 | 26.97 |
| CDX74342 | Canola | cytosol | 34.16 | 26.85 |
| CDX69778 | Canola | cytosol | 32.18 | 26.26 |
| CDX85726 | Canola | cytosol | 31.68 | 26.12 |
| CDX78412 | Canola | cytosol | 31.93 | 25.96 |
| CDY13319 | Canola | cytosol | 31.44 | 25.92 |
| CDY51111 | Canola | cytosol | 15.84 | 25.7 |
| CDY27357 | Canola | cytosol, plastid | 32.18 | 25.54 |
| CDX95397 | Canola | cytosol | 31.19 | 25.51 |
| CDX76225 | Canola | cytosol | 31.19 | 25.4 |
| CDY37067 | Canola | cytosol | 31.93 | 25.29 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 32.18 | 24.86 |
| CDY56825 | Canola | cytosol | 13.12 | 23.25 |
| CDY68148 | Canola | nucleus | 39.36 | 21.52 |
| CDY02574 | Canola | plastid | 22.28 | 18.83 |
| CDY47205 | Canola | plastid | 22.28 | 18.83 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 13.86 | 18.73 |
| CDY49860 | Canola | cytosol | 2.97 | 9.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078EVM6 | EnsemblPlants:CDY03623 | ProteinID:CDY03623 | ProteinID:CDY03623.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00116386001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE4080 | : | : | : | : | : |
Description
BnaC03g68820D
Coordinates
chrLK031944:-:1015481..1017654
Molecular Weight (calculated)
45447.9 Da
IEP (calculated)
8.842
GRAVY (calculated)
-0.319
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAKGSSDW RSVGGALDDE NLVFETTKGI KPIASFDEMG MNDKVLRGVY DYGFKKPSEI QQRAVMPILK GRDVIAQAQS GTGKTSMIAI SVCQIVNTSS
101: RKIQVLVLSP SRELASQTEK TIQAIGVHTS IQAHACIGGK SIGEDIKKLE RGVHAVSGTP GRVYDMIKRG SLQTKSVKLL ILDESDEMLS KGLKDQIYDV
201: YRSLPHDIQV CLISATLPQE ILEMTNKFMT DPVRILVKRD ELTLEGIKQY YVDVGEEEWK FDTLCDLYGR LVINQAIIFC NTRQKVDWLT EKMRSSNFIV
301: SSMHGDKRQK ERDEIMNQFR SFKSRVLIAS DVWARGIDVQ TVSHVVNYDV PNNPELYIHR IGRAGRFGRE GVAINFVKNS DTKTLRDIER YYGTKIREMP
401: ADLA
101: RKIQVLVLSP SRELASQTEK TIQAIGVHTS IQAHACIGGK SIGEDIKKLE RGVHAVSGTP GRVYDMIKRG SLQTKSVKLL ILDESDEMLS KGLKDQIYDV
201: YRSLPHDIQV CLISATLPQE ILEMTNKFMT DPVRILVKRD ELTLEGIKQY YVDVGEEEWK FDTLCDLYGR LVINQAIIFC NTRQKVDWLT EKMRSSNFIV
301: SSMHGDKRQK ERDEIMNQFR SFKSRVLIAS DVWARGIDVQ TVSHVVNYDV PNNPELYIHR IGRAGRFGRE GVAINFVKNS DTKTLRDIER YYGTKIREMP
401: ADLA
001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
Arabidopsis Description
RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.