Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032127.1-P | Field mustard | cytosol | 99.75 | 99.75 |
| CDX82280 | Canola | cytosol | 99.51 | 99.51 |
| CDY33416 | Canola | cytosol | 99.26 | 99.26 |
| CDY24617 | Canola | cytosol | 99.02 | 99.02 |
| CDY42205 | Canola | cytosol | 99.02 | 99.02 |
| CDY51692 | Canola | cytosol | 99.02 | 99.02 |
| AT3G19760.1 | Thale cress | cytosol | 96.08 | 96.08 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 83.58 | 87.21 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 82.35 | 86.6 |
| KRH12197 | Soybean | nucleus | 85.05 | 85.47 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 86.76 | 85.3 |
| KRH37217 | Soybean | endoplasmic reticulum | 85.05 | 85.26 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 84.07 | 84.9 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 76.72 | 84.82 |
| EES07819 | Sorghum | cytosol | 84.56 | 84.77 |
| Os01t0639100-01 | Rice | nucleus | 83.82 | 84.65 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 84.07 | 84.28 |
| PGSC0003DMT400019783 | Potato | cytosol | 84.07 | 83.86 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 81.62 | 81.82 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 77.7 | 81.7 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 81.86 | 81.07 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 81.62 | 80.63 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 81.62 | 80.63 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 79.9 | 80.49 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 81.13 | 80.34 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 63.97 | 78.38 |
| Zm00001d018542_P006 | Maize | cytosol | 84.07 | 77.43 |
| CDY58940 | Canola | cytosol | 75.49 | 76.24 |
| CDY03623 | Canola | cytosol | 75.25 | 75.99 |
| CDY37498 | Canola | cytosol, mitochondrion | 15.93 | 70.65 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 25.74 | 68.63 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 25.74 | 68.63 |
| CDY26130 | Canola | cytosol | 16.91 | 68.32 |
| CDY22577 | Canola | cytosol | 24.51 | 67.11 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 25.98 | 65.43 |
| CDY08220 | Canola | cytosol | 60.78 | 60.19 |
| CDY39079 | Canola | cytosol | 60.78 | 60.19 |
| CDY10607 | Canola | cytosol | 60.29 | 59.85 |
| CDY02469 | Canola | cytosol | 60.29 | 59.71 |
| CDY32586 | Canola | cytosol | 54.41 | 58.73 |
| CDY24057 | Canola | cytosol | 59.07 | 58.5 |
| CDY33073 | Canola | cytosol | 58.58 | 58.01 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.29 | 57.61 |
| CDY55205 | Canola | cytosol | 59.07 | 56.97 |
| CDX97528 | Canola | cytosol | 58.58 | 56.24 |
| CDX82505 | Canola | cytosol | 58.58 | 55.84 |
| CDX75739 | Canola | cytosol | 58.58 | 54.82 |
| CDY67069 | Canola | cytosol | 13.48 | 54.46 |
| CDY72259 | Canola | cytosol | 25.98 | 47.75 |
| CDY11154 | Canola | cytosol | 22.55 | 45.54 |
| CDY54037 | Canola | cytosol | 28.92 | 44.19 |
| CDY53867 | Canola | cytosol | 42.89 | 41.47 |
| CDY54061 | Canola | cytosol | 30.15 | 37.73 |
| CDX72939 | Canola | mitochondrion, nucleus | 41.67 | 36.48 |
| CDY45702 | Canola | cytosol | 18.38 | 36.41 |
| CDY51112 | Canola | cytosol | 33.33 | 30.91 |
| CDX85725 | Canola | cytosol | 33.33 | 30.77 |
| CDX70383 | Canola | cytosol | 33.33 | 30.43 |
| CDY71952 | Canola | cytosol | 30.88 | 30.22 |
| CDY48935 | Canola | cytosol, plastid | 34.56 | 29.68 |
| CDX71756 | Canola | cytosol | 34.8 | 29.65 |
| CDY07205 | Canola | cytosol | 35.54 | 29.53 |
| CDX67556 | Canola | cytosol | 34.07 | 29.45 |
| CDX91901 | Canola | cytosol | 36.03 | 29.34 |
| CDY51147 | Canola | cytosol | 35.54 | 29.23 |
| CDY58787 | Canola | cytosol | 34.31 | 29.05 |
| CDX74342 | Canola | cytosol | 35.78 | 28.4 |
| CDY13319 | Canola | cytosol | 33.82 | 28.16 |
| CDX85726 | Canola | cytosol | 33.33 | 27.76 |
| CDX69778 | Canola | cytosol | 33.58 | 27.68 |
| CDX95397 | Canola | cytosol | 33.33 | 27.53 |
| CDX76225 | Canola | cytosol | 33.33 | 27.42 |
| CDX78412 | Canola | cytosol | 33.33 | 27.36 |
| CDY51111 | Canola | cytosol | 16.67 | 27.31 |
| CDY27357 | Canola | cytosol, plastid | 33.58 | 26.92 |
| CDY37067 | Canola | cytosol | 33.58 | 26.86 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 33.58 | 26.2 |
| CDY56825 | Canola | cytosol | 13.48 | 24.12 |
| CDY68148 | Canola | nucleus | 42.16 | 23.27 |
| CDY47205 | Canola | plastid | 24.02 | 20.5 |
| CDY02574 | Canola | plastid | 24.02 | 20.5 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.46 | 19.73 |
| CDY49860 | Canola | cytosol | 2.94 | 9.6 |
Protein Annotations
| MapMan:17.3.1.1.1 | Gene3D:3.40.50.300 | GO:A0A078GC55 | UniProt:A0A078GC55 | EnsemblPlants:CDY22956 | ProteinID:CDY22956 |
| ProteinID:CDY22956.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00021357001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EF412E | SEG:seg | : | : | : |
Description
BnaC03g41130DBnaC03g41130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC55]
Coordinates
chrLK032138:-:196003..198627
Molecular Weight (calculated)
45996.5 Da
IEP (calculated)
5.779
GRAVY (calculated)
-0.299
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEANSSRGG GRRGGGPMDD DKLVFETTEG IEPITNFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQIVDTS
101: SREVQALILS PTRELASQTE KTIQAIGLHA NIQAHACIGG KSVGEDIRKL ENGVHVVSGT PGRVCDMIKR KSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDWL SEKMRTNNFT
301: VSSMHGDMPQ KERDEIMNQF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
101: SREVQALILS PTRELASQTE KTIQAIGLHA NIQAHACIGG KSVGEDIRKL ENGVHVVSGT PGRVCDMIKR KSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDWL SEKMRTNNFT
301: VSSMHGDMPQ KERDEIMNQF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
Arabidopsis Description
RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.