CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014267.1-P	Field mustard	cytosol	100.0	100.0
CDY03623	Canola	cytosol	99.26	99.26
AT1G51380.1	Thale cress	cytosol	90.1	92.86
CDY22577	Canola	cytosol	30.45	82.55
CDY24617	Canola	cytosol	76.49	75.74
CDY42205	Canola	cytosol	76.24	75.49
CDY33416	Canola	cytosol	76.24	75.49
CDY22956	Canola	cytosol	76.24	75.49
CDY51692	Canola	cytosol	75.99	75.25
CDX82280	Canola	cytosol	75.99	75.25
GSMUA_Achr9P23810_001	Banana	cytosol	70.79	73.71
KRH12197	Soybean	nucleus	72.77	72.41
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	70.05	72.38
KRH37217	Soybean	endoplasmic reticulum	72.77	72.24
VIT_06s0080g00550.t01	Wine grape	cytosol	74.01	72.05
Os01t0639100-01	Rice	nucleus	71.78	71.78
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	71.53	71.53
EES07819	Sorghum	cytosol	70.79	70.27
Zm00001d051840_P003	Maize	extracellular, mitochondrion	70.54	70.02
PGSC0003DMT400019783	Potato	cytosol	70.79	69.93
TraesCS2A01G552800.1	Wheat	cytosol	63.37	69.38
HORVU6Hr1G094560.1	Barley	cytosol	69.55	68.2
TraesCS2B01G584200.1	Wheat	mitochondrion	68.32	67.81
TraesCS6A01G416700.1	Wheat	nucleus	69.06	67.55
TraesCS6D01G401900.1	Wheat	nucleus	69.06	67.55
TraesCS2D01G554300.1	Wheat	nucleus	64.85	67.53
TraesCS2D01G553400.1	Wheat	cytosol	67.57	67.41
TraesCS6B01G472700.1	Wheat	nucleus	68.56	67.23
GSMUA_Achr3P27120_001	Banana	cytosol	53.22	64.56
Zm00001d018542_P006	Maize	cytosol	70.3	64.11
CDY37498	Canola	cytosol, mitochondrion	13.61	59.78
HORVU3Hr1G015460.1	Barley	cytosol	22.28	58.82
HORVU3Hr1G015500.1	Barley	cytosol	22.28	58.82
CDY26130	Canola	cytosol	14.36	57.43
HORVU3Hr1G050890.1	Barley	cytosol	22.03	54.94
CDY08220	Canola	cytosol	55.69	54.61
CDY32586	Canola	cytosol	50.74	54.23
CDY39079	Canola	cytosol	55.2	54.13
CDY10607	Canola	cytosol	54.95	54.01
CDY02469	Canola	cytosol	54.95	53.88
CDY33073	Canola	cytosol	53.96	52.91
CDY24057	Canola	cytosol	53.71	52.67
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.95	51.99
CDY55205	Canola	cytosol	54.21	51.77
CDX97528	Canola	cytosol	54.21	51.53
CDX82505	Canola	cytosol	53.47	50.47
CDX75739	Canola	cytosol	53.47	49.54
CDY67069	Canola	cytosol	11.88	47.52
CDY72259	Canola	cytosol	24.01	43.69
CDY54037	Canola	cytosol	26.98	40.82
CDY11154	Canola	cytosol	20.3	40.59
CDY53867	Canola	cytosol	39.6	37.91
CDY45702	Canola	cytosol	18.07	35.44
CDY54061	Canola	cytosol	28.22	34.97
CDX72939	Canola	mitochondrion, nucleus	39.11	33.91
CDY51112	Canola	cytosol	32.18	29.55
CDX85725	Canola	cytosol	32.18	29.41
CDX70383	Canola	cytosol	32.18	29.08
CDY71952	Canola	cytosol	29.95	29.02
CDY07205	Canola	cytosol	34.16	28.11
CDX91901	Canola	cytosol	34.65	27.94
CDY51147	Canola	cytosol	34.16	27.82
CDY48935	Canola	cytosol, plastid	32.43	27.58
CDX71756	Canola	cytosol	32.67	27.56
CDY58787	Canola	cytosol	32.43	27.18
CDX74342	Canola	cytosol	34.41	27.04
CDX67556	Canola	cytosol	31.44	26.91
CDX69778	Canola	cytosol	32.43	26.46
CDX85726	Canola	cytosol	31.93	26.33
CDX78412	Canola	cytosol	32.18	26.16
CDY51111	Canola	cytosol	16.09	26.1
CDY27357	Canola	cytosol, plastid	32.43	25.74
CDY13319	Canola	cytosol	31.19	25.71
CDY37067	Canola	cytosol	32.18	25.49
CDX95397	Canola	cytosol	30.94	25.3
CDX76225	Canola	cytosol	30.94	25.2
CDX69777	Canola	cytosol, nucleus, plasma membrane	32.43	25.05
CDY56825	Canola	cytosol	13.37	23.68
CDY68148	Canola	nucleus	39.36	21.52
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	14.11	19.06
CDY47205	Canola	plastid	22.28	18.83
CDY02574	Canola	plastid	22.28	18.83
CDY49860	Canola	cytosol	2.97	9.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078J6R0	UniProt:A0A078J6R0	EnsemblPlants:CDY58940	ProteinID:CDY58940
ProteinID:CDY58940.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00025340001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002545FA6	:	:	:	:

Description

BnaAnng15580DBnaAnng15580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6R0]

Coordinates

chrLK033713:-:7364..9489

Molecular Weight (calculated)

45519.0 Da

IEP (calculated)

8.842

GRAVY (calculated)

-0.319

Length

404 amino acids

Sequence
(BLAST)

001: MAAAKGNSDW RSVGGALDDE NLVFETTKGI KPIASFDEMG MNDKVLRGVY DYGFKKPSEI QQRAVMPILK GRDVIAQAQS GTGKTSMIAI SVCQIVNTSS
101: RKIQVLVLSP SRELASQTEK TIQAIGVHTS IQAHACIGGK SIGEDIKKLE RGVHAVSGTP GRVYDMIKRG SLQTKSVKLL ILDESDEMLS KGLKDQIYDV
201: YRSLPHDIQV CLISATLPQE ILEMTNKFMT DPVRILVKRD ELTLEGIKQY YVDVGEEEWK FDTLCDLYGR LVINQAIIFC NTRQKVDWLT EKMRSSNFIV
301: SSMHGDKRQK ERDEIMNQFR SFKSRVLIAS DVWARGIDVQ TVSHVINYDV PNNPELYIHR IGRAGRFGRE GVAINFVKNS DMKTLRDIER YYGTKIREMP
401: ADLA

Best Arabidopsis Sequence Match ( AT1G51380.1 )
(BLAST)

001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV

Arabidopsis Description

RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.