Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037977.1-P Field mustard cytosol 99.27 99.27
CDY33073 Canola cytosol 98.54 98.54
CDY10607 Canola cytosol 93.45 93.67
CDY08220 Canola cytosol 93.45 93.45
CDY02469 Canola cytosol 93.45 93.45
CDY26130 Canola cytosol 22.82 93.07
AT1G54270.1 Thale cress cytosol 92.48 92.48
CDY39079 Canola cytosol 91.5 91.5
CDY37498 Canola cytosol, mitochondrion 20.39 91.3
CDY32586 Canola cytosol 82.77 90.21
Solyc12g096000.1.1 Tomato cytosol, nucleus, unclear 86.17 90.1
Solyc08g062800.2.1 Tomato extracellular, plastid 90.29 90.07
PGSC0003DMT400075339 Potato cytosol 90.29 90.07
PGSC0003DMT400021166 Potato cytosol 90.29 90.07
Solyc12g095990.1.1 Tomato nucleus 90.05 89.83
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 89.81 89.59
PGSC0003DMT400075336 Potato cytosol 89.08 89.51
KRH52210 Soybean cytosol, endoplasmic reticulum 89.32 89.1
CDY55205 Canola cytosol 89.32 87.0
CDY72259 Canola cytosol 46.84 86.94
CDY67069 Canola cytosol 21.12 86.14
CDX97528 Canola cytosol 88.83 86.12
CDX82505 Canola cytosol 89.32 85.98
CDY49861 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 88.59 85.48
CDX75739 Canola cytosol 89.56 84.63
CDY11154 Canola cytosol 38.35 78.22
CDY54037 Canola cytosol 41.5 64.04
CDY53867 Canola cytosol 64.08 62.56
CDX82280 Canola cytosol 58.74 59.31
CDY51692 Canola cytosol 58.74 59.31
CDY42205 Canola cytosol 58.74 59.31
CDY33416 Canola cytosol 58.74 59.31
CDY24617 Canola cytosol 58.74 59.31
CDY22956 Canola cytosol 58.5 59.07
CDY22577 Canola cytosol 20.15 55.7
CDX72939 Canola mitochondrion, nucleus 62.86 55.58
CDY58940 Canola cytosol 52.67 53.71
CDY03623 Canola cytosol 52.43 53.47
TraesCS6B01G217800.1 Wheat cytosol 52.91 51.78
GSMUA_Achr9P13950_001 Banana mitochondrion 34.95 46.91
TraesCS6A01G186600.1 Wheat cytosol 54.13 40.55
CDY54061 Canola cytosol 31.31 39.57
CDY45702 Canola cytosol 18.69 37.38
CDY68148 Canola nucleus 63.59 35.45
HORVU7Hr1G073770.1 Barley cytosol, nucleus 52.67 33.91
CDX85725 Canola cytosol 36.16 33.71
CDY51112 Canola cytosol 35.92 33.64
CDX70383 Canola cytosol 36.16 33.33
CDY71952 Canola cytosol 33.01 32.61
CDY48935 Canola cytosol, plastid 36.41 31.58
CDX71756 Canola cytosol 36.16 31.11
CDY07205 Canola cytosol 36.89 30.96
CDY58787 Canola cytosol 36.16 30.91
CDY51147 Canola cytosol 36.89 30.65
CDX85726 Canola cytosol 35.68 30.0
CDX78412 Canola cytosol 36.16 29.98
CDX91901 Canola cytosol 36.41 29.94
CDX69778 Canola cytosol 35.92 29.9
CDY37067 Canola cytosol 35.92 29.02
CDX74342 Canola cytosol 36.16 28.99
CDY27357 Canola cytosol, plastid 35.68 28.88
CDX67556 Canola cytosol 32.77 28.6
CDX69777 Canola cytosol, nucleus, plasma membrane 35.92 28.3
CDY51111 Canola cytosol 16.99 28.11
CDY13319 Canola cytosol 33.01 27.76
OQU84655 Sorghum cytosol 51.21 27.58
CDX76225 Canola cytosol 33.01 27.42
CDX95397 Canola cytosol 32.77 27.33
Os02t0221300-01 Rice cytosol 53.4 24.97
CDY56825 Canola cytosol 13.59 24.56
Zm00001d016350_P001 Maize vacuole 28.64 23.41
CDY02574 Canola plastid 25.73 22.18
CDY47205 Canola plastid 25.49 21.97
Zm00001d016351_P002 Maize nucleus 47.09 21.75
KXG29825 Sorghum cytosol 46.36 21.66
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 15.05 20.74
TraesCS6A01G186800.1 Wheat cytosol 55.34 17.9
TraesCS6D01G173700.3 Wheat cytosol 55.58 17.04
TraesCS6B01G217700.1 Wheat cytosol 54.37 16.78
CDY49860 Canola cytosol 3.88 12.8
Protein Annotations
MapMan:17.4.2.1Gene3D:3.40.50.300GO:A0A078GFZ7UniProt:A0A078GFZ7EnsemblPlants:CDY24057ProteinID:CDY24057
ProteinID:CDY24057.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824
GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00024588001InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271ScanProsite:PS00039PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031
PANTHER:PTHR24031:SF551InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540
UniParc:UPI0004EEF205:::::
Description
BnaA06g00550DBnaA06g00550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFZ7]
Coordinates
chrLK032153:-:93678..95923
Molecular Weight (calculated)
46656.1 Da
IEP (calculated)
5.097
GRAVY (calculated)
-0.246
Length
412 amino acids
Sequence
(BLAST)
001: MAGSAPEGTQ FDTRQFDQKL NDVLEGQNEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCNGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDITLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHT CVGGTSVVED QRILQAGVHV VVGTPGRVFD MLRRQSLRSD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT KKFMSKPVRI LVKRDELTLE GIRQFYVNVE KEEYKLETLC DLYDTLNITQ GVIFVNTRRK VDWLTDQMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGTAIN FVTRDDERML TDIQKFYNVA
401: VEELPSKVDD LI
Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.