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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67069 Canola cytosol 44.06 88.12
VIT_04s0008g00990.t01 Wine grape cytosol 44.55 73.17
CDY72259 Canola cytosol 77.23 70.27
CDY54037 Canola cytosol 58.42 44.19
CDY53867 Canola cytosol 90.59 43.36
CDY49861 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 89.6 42.39
CDY02469 Canola cytosol 78.71 38.59
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 78.71 38.5
CDY10607 Canola cytosol 78.22 38.44
CDY24057 Canola cytosol 78.22 38.35
CDX72939 Canola mitochondrion, nucleus 88.12 38.2
CDY39079 Canola cytosol 77.72 38.11
CDY08220 Canola cytosol 77.72 38.11
KRH52210 Soybean cytosol, endoplasmic reticulum 77.23 37.77
CDY33073 Canola cytosol 76.24 37.38
CDY55205 Canola cytosol 78.22 37.35
CDX97528 Canola cytosol 78.22 37.18
CDX82505 Canola cytosol 78.22 36.92
Solyc07g040750.1.1 Tomato cytosol 75.25 36.8
CDX75739 Canola cytosol 78.22 36.24
CDY32586 Canola cytosol 61.88 33.07
GSMUA_Achr9P13950_001 Banana mitochondrion 37.13 24.43
CDY68148 Canola nucleus 89.11 24.36
TraesCS6B01G217800.1 Wheat cytosol 47.52 22.8
CDX82280 Canola cytosol 45.54 22.55
CDY51692 Canola cytosol 45.54 22.55
CDY22956 Canola cytosol 45.54 22.55
CDY24617 Canola cytosol 45.54 22.55
CDY33416 Canola cytosol 45.54 22.55
CDY42205 Canola cytosol 45.05 22.3
CDY03623 Canola cytosol 40.59 20.3
CDY58940 Canola cytosol 40.59 20.3
VIT_04s0008g00980.t01 Wine grape cytosol 7.92 19.05
TraesCS6A01G186600.1 Wheat cytosol 48.51 17.82
CDY54061 Canola cytosol 27.72 17.18
HORVU7Hr1G073770.1 Barley cytosol, nucleus 47.52 15.0
CDY48935 Canola cytosol, plastid 32.67 13.89
CDX85725 Canola cytosol 30.2 13.8
CDX71756 Canola cytosol 32.67 13.78
CDX70383 Canola cytosol 30.2 13.65
CDY51112 Canola cytosol 29.7 13.64
CDY58787 Canola cytosol 31.68 13.28
CDY07205 Canola cytosol 31.19 12.83
CDY71952 Canola cytosol 26.24 12.71
CDY51147 Canola cytosol 31.19 12.7
CDY37067 Canola cytosol 31.68 12.55
CDY27357 Canola cytosol, plastid 31.19 12.38
CDX78412 Canola cytosol 30.2 12.27
CDX85726 Canola cytosol 29.7 12.24
CDX91901 Canola cytosol 30.2 12.18
CDX69778 Canola cytosol 29.7 12.12
CDX74342 Canola cytosol 29.7 11.67
OQU84655 Sorghum cytosol 44.06 11.63
CDX69777 Canola cytosol, nucleus, plasma membrane 29.7 11.47
CDY02574 Canola plastid 26.24 11.09
CDX67556 Canola cytosol 25.74 11.02
CDX76225 Canola cytosol 26.73 10.89
CDY47205 Canola plastid 25.74 10.88
CDX95397 Canola cytosol 26.24 10.73
CDY13319 Canola cytosol 25.74 10.61
KXG29825 Sorghum cytosol 46.04 10.54
Os02t0221300-01 Rice cytosol 45.54 10.44
CDY45702 Canola cytosol 10.4 10.19
Zm00001d016351_P002 Maize nucleus 44.55 10.09
TraesCS6A01G186800.1 Wheat cytosol 49.01 7.77
TraesCS6D01G173700.3 Wheat cytosol 49.01 7.37
Zm00001d016350_P001 Maize vacuole 18.32 7.34
TraesCS6B01G217700.1 Wheat cytosol 48.02 7.27
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 6.93 4.68
CDY49860 Canola cytosol 1.49 2.4
CDY51111 Canola cytosol 1.98 1.61
CDY37498 Canola cytosol, mitochondrion 0.5 1.09
CDY26130 Canola cytosol 0.5 0.99
CDY56825 Canola cytosol 0.99 0.88
CDY22577 Canola cytosol 0.5 0.67
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078FDY9UniProt:A0A078FDY9EnsemblPlants:CDY11154ProteinID:CDY11154
ProteinID:CDY11154.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00049154001InterPro:Helicase_ATP-bdInterPro:IPR014001InterPro:P-loop_NTPasePFAM:PF00270
ScanProsite:PS00039PFscan:PS51192PANTHER:PTHR24031PANTHER:PTHR24031:SF551InterPro:RNA-helicase_DEAD-box_CSSMART:SM00487
SUPFAM:SSF52540UniParc:UPI0004EE6012SEG:seg:::
Description
BnaC06g24060DBnaC06g24060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDY9]
Coordinates
chrLK032009:+:794775..795612
Molecular Weight (calculated)
22387.0 Da
IEP (calculated)
5.330
GRAVY (calculated)
-0.125
Length
202 amino acids
Sequence
(BLAST)
001: MAGRATEGTQ YDPRQFDSKM NAILGEEGEE TFYTTFDEVC YSFDTMELRS DPLRGIYAYA DLPRGIIPFC KGLDVIQQAQ SGTGKTATFC SGVLQQPDYT
101: LVQCQALVLA PTRELSQQIE KVMRALGDYL GVKVHACVGG TSVRKDQRIL QSGVHVVVGT PGSVLDMLRR QSLRADAIKM FVLDEADEML SRGFKLLKNL
201: IF
Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.