Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26130 | Canola | cytosol | 24.87 | 93.07 |
| Bra029124.1-P | Field mustard | cytosol | 99.47 | 91.71 |
| CDY37498 | Canola | cytosol, mitochondrion | 22.22 | 91.3 |
| CDY08220 | Canola | cytosol | 92.06 | 84.47 |
| CDY10607 | Canola | cytosol | 91.53 | 84.18 |
| CDY02469 | Canola | cytosol | 91.53 | 83.98 |
| AT1G54270.1 | Thale cress | cytosol | 91.27 | 83.74 |
| CDY39079 | Canola | cytosol | 91.01 | 83.5 |
| Solyc12g095990.1.1 | Tomato | nucleus | 90.48 | 82.81 |
| PGSC0003DMT400075339 | Potato | cytosol | 90.48 | 82.81 |
| CDY24057 | Canola | cytosol | 90.21 | 82.77 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 86.24 | 82.74 |
| CDY33073 | Canola | cytosol | 89.95 | 82.52 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 89.95 | 82.32 |
| PGSC0003DMT400021166 | Potato | cytosol | 89.95 | 82.32 |
| PGSC0003DMT400075336 | Potato | cytosol | 88.89 | 81.95 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 88.89 | 81.36 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 88.62 | 81.11 |
| CDY55205 | Canola | cytosol | 87.83 | 78.49 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 88.62 | 78.45 |
| CDX97528 | Canola | cytosol | 87.57 | 77.88 |
| CDX82505 | Canola | cytosol | 88.1 | 77.8 |
| CDX75739 | Canola | cytosol | 88.36 | 76.61 |
| CDY67069 | Canola | cytosol | 19.84 | 74.26 |
| CDY72259 | Canola | cytosol | 41.8 | 71.17 |
| CDY11154 | Canola | cytosol | 33.07 | 61.88 |
| CDY22577 | Canola | cytosol | 22.75 | 57.72 |
| CDY53867 | Canola | cytosol | 61.9 | 55.45 |
| CDY54037 | Canola | cytosol | 39.15 | 55.43 |
| CDY22956 | Canola | cytosol | 58.73 | 54.41 |
| CDY42205 | Canola | cytosol | 58.73 | 54.41 |
| CDY51692 | Canola | cytosol | 58.73 | 54.41 |
| CDY24617 | Canola | cytosol | 58.73 | 54.41 |
| CDX82280 | Canola | cytosol | 58.73 | 54.41 |
| CDY33416 | Canola | cytosol | 58.73 | 54.41 |
| CDY58940 | Canola | cytosol | 54.23 | 50.74 |
| CDY03623 | Canola | cytosol | 53.97 | 50.49 |
| CDX72939 | Canola | mitochondrion, nucleus | 60.85 | 49.36 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 53.97 | 48.46 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 35.19 | 43.32 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 55.56 | 38.18 |
| CDY54061 | Canola | cytosol | 30.69 | 35.58 |
| CDY45702 | Canola | cytosol | 17.72 | 32.52 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 53.97 | 31.88 |
| CDY68148 | Canola | nucleus | 61.38 | 31.39 |
| CDX85725 | Canola | cytosol | 35.71 | 30.54 |
| CDY51112 | Canola | cytosol | 35.45 | 30.45 |
| CDX70383 | Canola | cytosol | 35.71 | 30.2 |
| CDY48935 | Canola | cytosol, plastid | 37.04 | 29.47 |
| CDX71756 | Canola | cytosol | 36.77 | 29.02 |
| CDY71952 | Canola | cytosol | 31.75 | 28.78 |
| CDY58787 | Canola | cytosol | 36.51 | 28.63 |
| CDY07205 | Canola | cytosol | 37.04 | 28.51 |
| CDY51147 | Canola | cytosol | 37.04 | 28.23 |
| CDX91901 | Canola | cytosol | 37.3 | 28.14 |
| CDX85726 | Canola | cytosol | 35.45 | 27.35 |
| CDX78412 | Canola | cytosol | 35.71 | 27.16 |
| CDX69778 | Canola | cytosol | 35.45 | 27.07 |
| CDX74342 | Canola | cytosol | 36.77 | 27.04 |
| CDY51111 | Canola | cytosol | 17.72 | 26.91 |
| CDY37067 | Canola | cytosol | 36.24 | 26.86 |
| CDY27357 | Canola | cytosol, plastid | 35.98 | 26.72 |
| CDX67556 | Canola | cytosol | 32.54 | 26.06 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 35.45 | 25.62 |
| CDX76225 | Canola | cytosol | 33.33 | 25.4 |
| CDY13319 | Canola | cytosol | 32.8 | 25.31 |
| CDX95397 | Canola | cytosol | 33.07 | 25.3 |
| OQU84655 | Sorghum | cytosol | 48.68 | 24.05 |
| CDY56825 | Canola | cytosol | 14.29 | 23.68 |
| Os02t0221300-01 | Rice | cytosol | 52.91 | 22.7 |
| CDY02574 | Canola | plastid | 25.66 | 20.29 |
| CDY47205 | Canola | plastid | 25.4 | 20.08 |
| Zm00001d016351_P002 | Maize | nucleus | 46.56 | 19.73 |
| Zm00001d016350_P001 | Maize | vacuole | 25.93 | 19.44 |
| KXG29825 | Sorghum | cytosol | 45.24 | 19.39 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.81 | 18.73 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 56.88 | 16.88 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 57.14 | 16.07 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 55.82 | 15.81 |
| CDY49860 | Canola | cytosol | 4.5 | 13.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078H459 | UniProt:A0A078H459 | EnsemblPlants:CDY32586 | ProteinID:CDY32586 |
| ProteinID:CDY32586.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00052601001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEBC34 | : | : | : | : |
Description
BnaC03g15540DBnaC03g15540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H459]
Coordinates
chrLK032297:+:30538..32599
Molecular Weight (calculated)
42531.1 Da
IEP (calculated)
5.165
GRAVY (calculated)
-0.161
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSATQFDD ARQFDQALSE ILEGHDEFFT SYDEVYESFD GMGLQENLLR GIYAYGFEKP SAIQQRGIVP FCKGLDVIQQ AQSGTGKTAT FCSGVLQQLD
101: VTLVQCQALV LAPTRELAQQ IEKVMRALGD YIGVKVHACV GGTSVLDDKR ILQAGVHVVV GTPGRDQIYD IFQLLPPKIQ VGVFSATMPP EALEITRKFM
201: SKPVRILVKR DELTLEGIRQ FYVDVDKEEW KFETLCDLYE TLAITQSVIF VNTRRKVDWL TEKMRSRDHT VSATHGDMDQ NTRDIIMREF RSGSSRVLIT
301: TDLLARGIDV QQVSLVINFD LPTQPANYLH RIGRSGRFGR KGAAINFVTR DDEKMLADIQ KFYNMVVEEL PSNLADLL
101: VTLVQCQALV LAPTRELAQQ IEKVMRALGD YIGVKVHACV GGTSVLDDKR ILQAGVHVVV GTPGRDQIYD IFQLLPPKIQ VGVFSATMPP EALEITRKFM
201: SKPVRILVKR DELTLEGIRQ FYVDVDKEEW KFETLCDLYE TLAITQSVIF VNTRRKVDWL TEKMRSRDHT VSATHGDMDQ NTRDIIMREF RSGSSRVLIT
301: TDLLARGIDV QQVSLVINFD LPTQPANYLH RIGRSGRFGR KGAAINFVTR DDEKMLADIQ KFYNMVVEEL PSNLADLL
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.