Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES12452 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | EES12452 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016351_P002 | Maize | nucleus | 75.62 | 74.78 |
| OQU84655 | Sorghum | cytosol | 55.67 | 64.18 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 7.26 | 52.03 |
| EES04512 | Sorghum | cytosol | 23.13 | 49.76 |
| CDY72259 | Canola | cytosol | 12.47 | 49.55 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 23.02 | 49.15 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 23.13 | 48.46 |
| Solyc12g095990.1.1 | Tomato | nucleus | 22.68 | 48.43 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 22.68 | 48.43 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 21.54 | 48.22 |
| PGSC0003DMT400075339 | Potato | cytosol | 22.56 | 48.18 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 22.45 | 47.94 |
| PGSC0003DMT400021166 | Potato | cytosol | 22.45 | 47.94 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 4.54 | 47.62 |
| PGSC0003DMT400075336 | Potato | cytosol | 22.11 | 47.56 |
| CDY67069 | Canola | cytosol | 5.44 | 47.52 |
| CDY08220 | Canola | cytosol | 22.0 | 47.09 |
| Bra014365.1-P | Field mustard | cytosol | 22.0 | 47.09 |
| Bra021517.1-P | Field mustard | cytosol | 22.0 | 47.09 |
| AT1G54270.1 | Thale cress | cytosol | 22.0 | 47.09 |
| CDY39079 | Canola | cytosol | 22.0 | 47.09 |
| Bra027387.1-P | Field mustard | cytosol | 21.88 | 46.84 |
| Solyc07g040750.1.1 | Tomato | cytosol | 21.88 | 46.73 |
| CDY10607 | Canola | cytosol | 21.77 | 46.72 |
| CDY02469 | Canola | cytosol | 21.77 | 46.6 |
| Bra030893.1-P | Field mustard | cytosol | 21.77 | 46.6 |
| Bra001530.1-P | Field mustard | cytosol | 21.88 | 46.39 |
| CDY24057 | Canola | cytosol | 21.66 | 46.36 |
| Bra037977.1-P | Field mustard | cytosol | 21.66 | 46.36 |
| Bra029124.1-P | Field mustard | cytosol | 21.43 | 46.1 |
| CDY11154 | Canola | cytosol | 10.54 | 46.04 |
| AT1G72730.1 | Thale cress | cytosol | 21.54 | 45.89 |
| CDY33073 | Canola | cytosol | 21.43 | 45.87 |
| CDY32586 | Canola | cytosol | 19.39 | 45.24 |
| AT3G13920.5 | Thale cress | cytosol | 21.43 | 45.11 |
| CDY55205 | Canola | cytosol | 21.32 | 44.44 |
| CDX97528 | Canola | cytosol | 21.2 | 44.0 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.2 | 43.79 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.2 | 43.79 |
| CDX82505 | Canola | cytosol | 21.09 | 43.46 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 26.76 | 42.91 |
| CDX75739 | Canola | cytosol | 21.2 | 42.89 |
| Os02t0221300-01 | Rice | cytosol | 42.18 | 42.22 |
| OQU76995 | Sorghum | cytosol | 23.58 | 40.23 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 28.46 | 39.22 |
| CDY54037 | Canola | cytosol | 11.56 | 38.2 |
| EES07819 | Sorghum | cytosol | 17.57 | 38.08 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 12.47 | 35.83 |
| CDY53867 | Canola | cytosol | 16.78 | 35.07 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 45.46 | 31.48 |
| CDX72939 | Canola | mitochondrion, nucleus | 16.33 | 30.9 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 45.69 | 29.99 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 45.12 | 29.81 |
| Bra016037.1-P | Field mustard | cytosol | 22.22 | 26.96 |
| KXG32708 | Sorghum | cytosol | 12.59 | 25.93 |
| KXG22711 | Sorghum | cytosol | 12.59 | 25.87 |
| EER91410 | Sorghum | cytosol | 13.15 | 22.88 |
| EER91411 | Sorghum | cytosol | 13.04 | 22.68 |
| EER95473 | Sorghum | cytosol | 12.59 | 22.24 |
| CDY68148 | Canola | nucleus | 17.8 | 21.24 |
| KXG34209 | Sorghum | plastid | 8.5 | 16.93 |
| OQU85369 | Sorghum | mitochondrion, plastid | 9.98 | 15.36 |
| CDY49860 | Canola | cytosol | 1.13 | 8.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A194YPR8 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4283 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KXG29825 | ProteinID:KXG29825 | ProteinID:KXG29825.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF14111 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | EnsemblPlantsGene:SORBI_3004G095000 | SUPFAM:SSF52540 | UniParc:UPI0007F2E669 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:+:8233963..8238218
Molecular Weight (calculated)
97865.8 Da
IEP (calculated)
7.613
GRAVY (calculated)
-0.369
Length
882 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGQPEGMHL VLETTEGCIS SQAVESRGIE KAMPQELCVT LSDKKGCFAC NERSHNLDQC KIKFELVPTA HQFGYATKFP FTIIQPSNEM VKKKKFCHHC
101: ILIKSDVVNL DKGILKDELN MFWKLSGNWE LRRECNMTFL ASFSSEGDVI SCLNNPETET LLINNKEVKL TLRRWKEGDD GSLDLVEEWL LVSGVPRIYR
201: NWKELYQVAS AFGVLMDVDE ESLEVGDKEP IRLKTAFRSF DGAPFSYYFT FGWSSKLVMV TAVQDKTEGM KHKNKELDKE HKKELHAAKS ILPEEPKGIE
301: ESRSNGKAKE NKISAPAATI ITNSEITITE KSSKPEGAQS IGPSPRSMIG EDHFGDIQKP PIKHVFKRRG KKQQVTEAIN KSPSNKMDKE VAPHSSSNAT
401: SSGASIGCDM LDQKDCSKME PNRELNMEEI TPVGKSEKAK KLGASRDTEC NNVAAPTINS KKTQILGDTS RTPRNELITK HTKGVGMDQM GSGVRGHKNM
501: DTRLLPSSEE VVIYDSFSEM GLQENLLKGI YKYGLEKPSA VHQRGIVPLC KGFGVVHRSL TGTTEIICSG VLQQLDYGSA ECQALILVPT PYLAQVTEKV
601: LGALGQFLGV TAQTCTGGTI APADQQTLSS RVQVVVGTPD CILDVLQRQA LSPDHIRMLF LDEADELLTG GSKDQIYNII LHLQNKIQVG LFSATYSHEA
701: IQTSCRFIDK PVEVIVPRGE ELKNVKQHFV TVENEELKLG KLYDLFKITG VQRLVIFVNT QDKAVSLAKD VSKHYTVSVS HDGMNQRASD TAIQKLMSGS
801: SRVLIATDHQ GTNTMPQVPI IINYDLPTKS MQYICRLQQQ NKLFRKPLSV IINLVTPADR CTLATITRFC NSSMGELPSD LK
101: ILIKSDVVNL DKGILKDELN MFWKLSGNWE LRRECNMTFL ASFSSEGDVI SCLNNPETET LLINNKEVKL TLRRWKEGDD GSLDLVEEWL LVSGVPRIYR
201: NWKELYQVAS AFGVLMDVDE ESLEVGDKEP IRLKTAFRSF DGAPFSYYFT FGWSSKLVMV TAVQDKTEGM KHKNKELDKE HKKELHAAKS ILPEEPKGIE
301: ESRSNGKAKE NKISAPAATI ITNSEITITE KSSKPEGAQS IGPSPRSMIG EDHFGDIQKP PIKHVFKRRG KKQQVTEAIN KSPSNKMDKE VAPHSSSNAT
401: SSGASIGCDM LDQKDCSKME PNRELNMEEI TPVGKSEKAK KLGASRDTEC NNVAAPTINS KKTQILGDTS RTPRNELITK HTKGVGMDQM GSGVRGHKNM
501: DTRLLPSSEE VVIYDSFSEM GLQENLLKGI YKYGLEKPSA VHQRGIVPLC KGFGVVHRSL TGTTEIICSG VLQQLDYGSA ECQALILVPT PYLAQVTEKV
601: LGALGQFLGV TAQTCTGGTI APADQQTLSS RVQVVVGTPD CILDVLQRQA LSPDHIRMLF LDEADELLTG GSKDQIYNII LHLQNKIQVG LFSATYSHEA
701: IQTSCRFIDK PVEVIVPRGE ELKNVKQHFV TVENEELKLG KLYDLFKITG VQRLVIFVNT QDKAVSLAKD VSKHYTVSVS HDGMNQRASD TAIQKLMSGS
801: SRVLIATDHQ GTNTMPQVPI IINYDLPTKS MQYICRLQQQ NKLFRKPLSV IINLVTPADR CTLATITRFC NSSMGELPSD LK
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.