Factsheet for AT3G13920.5

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55205	Canola	cytosol	93.56	92.67
CDX97528	Canola	cytosol	93.79	92.47
AT1G54270.1	Thale cress	cytosol	89.74	91.26
CDX82505	Canola	cytosol	92.84	90.89
Solyc12g095990.1.1	Tomato	nucleus	88.78	90.07
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	84.49	89.85
Solyc08g062800.2.1	Tomato	extracellular, plastid	88.54	89.83
PGSC0003DMT400075339	Potato	cytosol	88.54	89.83
PGSC0003DMT400021166	Potato	cytosol	88.54	89.83
CDX75739	Canola	cytosol	93.08	89.45
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.07	89.35
PGSC0003DMT400075336	Potato	cytosol	87.35	89.27
KRH52210	Soybean	cytosol, endoplasmic reticulum	87.83	89.1
AT1G72730.1	Thale cress	cytosol	84.73	85.75
AT3G19760.1	Thale cress	cytosol	57.76	59.31
AT1G51380.1	Thale cress	cytosol	51.79	55.36
TraesCS6B01G217800.1	Wheat	cytosol	51.55	51.31
GSMUA_Achr9P13950_001	Banana	mitochondrion	35.32	48.21
TraesCS6A01G186600.1	Wheat	cytosol	52.74	40.18
AT5G11170.1	Thale cress	cytosol	34.61	33.96
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	50.6	33.12
AT3G61240.1	Thale cress	cytosol	36.75	30.92
AT5G11200.2	Thale cress	cytosol	34.61	29.84
AT4G00660.1	Thale cress	cytosol, mitochondrion	35.56	29.5
AT2G45810.1	Thale cress	cytosol, plastid	36.04	28.6
AT3G53110.1	Thale cress	cytosol	31.5	26.61
OQU84655	Sorghum	cytosol	48.45	26.54
Os02t0221300-01	Rice	cytosol	51.31	24.4
Zm00001d016350_P001	Maize	vacuole	28.64	23.81
AT5G19210.2	Thale cress	plastid	25.54	22.67
Zm00001d016351_P002	Maize	nucleus	46.06	21.64
KXG29825	Sorghum	cytosol	45.11	21.43
AT1G12770.2	Thale cress	mitochondrion, plastid	27.45	20.87
TraesCS6A01G186800.1	Wheat	cytosol	53.7	17.66
TraesCS6D01G173700.3	Wheat	cytosol	54.18	16.89
TraesCS6B01G217700.1	Wheat	cytosol	52.74	16.55

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	EntrezGene:820605	UniProt:A0A1I9LSZ7	ProteinID:ANM65705.1	ArrayExpress:AT3G13920
EnsemblPlantsGene:AT3G13920	RefSeq:AT3G13920	TAIR:AT3G13920	RefSeq:AT3G13920-TAIR-G	EnsemblPlants:AT3G13920.5	Unigene:At.23558
InterPro:DEAD/DEAH_box_helicase_dom	Symbol:EIF4A1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	RefSeq:NP_001327653.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF551	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000848A152	:

Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]

Coordinates

chr3:-:4592256..4594760

Molecular Weight (calculated)

47461.2 Da

IEP (calculated)

5.771

GRAVY (calculated)

-0.211

Length

419 amino acids

Sequence
(BLAST)

001: MDFDMAGSAP EGTQFDARQF DQKLNEVLEG QDEFFTSYDD VHESFDAMGL QENLLRGIYA YGFEKPSAIQ QRGIVPFCKG LDVIQQAQSG TGKTATFCSG
101: VLQQLDFSLI QCQALVLAPT RELAQQIEKV MRALGDYLGV KVHACVGGTS VREDQRILQA GVHVVVGTPG RVFDMLKRQS LRADNIKMFV LDEADEMLSR
201: GFKDQIYDIF QLLPPKIQVG VFSATMPPEA LEITRKFMSK PVRILVKRDE LTLEGIKQFY VNVEKEEWKL ETLCDLYETL AITQSVIFVN TRRKVDWLTD
301: KMRSRDHTVS ATHGDMDQNT RDIIMREFRS GSSRVLITTD LLARGIDVQQ VSLVINFDLP TQPENYLHRI GRSGRFGRKG VAINFVTRDD ERMLCLRTWP
401: ICCEGRKEVG SVAVFALPY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.