Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95397 | Canola | cytosol | 89.11 | 89.47 |
| CDY13319 | Canola | cytosol | 88.31 | 89.39 |
| Bra040687.1-P | Field mustard | cytosol | 89.11 | 89.11 |
| CDX76225 | Canola | cytosol | 88.71 | 88.71 |
| Bra028547.1-P | Field mustard | cytosol | 87.7 | 88.59 |
| CDX67556 | Canola | cytosol | 83.67 | 87.92 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 31.85 | 64.75 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 61.9 | 62.91 |
| KRG93607 | Soybean | nucleus | 61.9 | 62.02 |
| Solyc04g082790.2.1 | Tomato | plastid | 61.09 | 60.72 |
| GSMUA_Achr10P... | Banana | nucleus | 58.06 | 59.75 |
| Solyc10g085790.1.1 | Tomato | nucleus | 61.09 | 59.65 |
| PGSC0003DMT400022137 | Potato | nucleus | 61.49 | 59.34 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 60.08 | 58.09 |
| EER95473 | Sorghum | cytosol | 56.05 | 55.71 |
| Os03t0158200-01 | Rice | cytosol, plasma membrane, plastid | 56.65 | 55.64 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 53.43 | 55.44 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 53.83 | 55.39 |
| HORVU4Hr1G072920.1 | Barley | cytosol, plasma membrane | 56.45 | 55.34 |
| TraesCS5D01G532700.1 | Wheat | cytosol | 53.02 | 55.14 |
| TraesCSU01G076700.1 | Wheat | cytosol | 53.02 | 55.14 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 56.05 | 54.94 |
| GSMUA_Achr6P14220_001 | Banana | cytosol | 57.86 | 54.88 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 56.05 | 54.72 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 55.24 | 54.37 |
| TraesCS4D01G272900.1 | Wheat | cytosol | 55.65 | 54.33 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 32.26 | 51.45 |
| AT1G72730.1 | Thale cress | cytosol | 28.23 | 33.82 |
| AT3G19760.1 | Thale cress | cytosol | 27.22 | 33.09 |
| AT1G54270.1 | Thale cress | cytosol | 27.42 | 33.01 |
| AT3G13920.5 | Thale cress | cytosol | 26.61 | 31.5 |
| AT1G51380.1 | Thale cress | cytosol | 24.4 | 30.87 |
| AT5G11170.1 | Thale cress | cytosol | 26.41 | 30.68 |
| AT5G11200.2 | Thale cress | cytosol | 26.41 | 26.95 |
| AT3G61240.1 | Thale cress | cytosol | 26.01 | 25.9 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 25.81 | 25.35 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 26.01 | 24.43 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 23.59 | 21.23 |
| AT5G19210.2 | Thale cress | plastid | 17.54 | 18.43 |
Protein Annotations
| MapMan:16.11.3.1 | Gene3D:3.40.50.300 | EntrezGene:824477 | ProteinID:AEE79038.1 | ArrayExpress:AT3G53110 | EnsemblPlantsGene:AT3G53110 |
| RefSeq:AT3G53110 | TAIR:AT3G53110 | RefSeq:AT3G53110-TAIR-G | EnsemblPlants:AT3G53110.1 | TAIR:AT3G53110.1 | EMBL:AY057548 |
| Unigene:At.675 | EMBL:BT002444 | EMBL:BT008867 | ProteinID:CAB64214.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006139 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008186 | GO:GO:0009408 |
| GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016973 | GO:GO:0051028 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | Symbol:LOS4 | RefSeq:NP_190879.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF331 | UniProt:Q93ZG7 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI00000AC0CD | SEG:seg | : | : | : | : |
Description
RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
Coordinates
chr3:+:19687740..19690661
Molecular Weight (calculated)
55387.0 Da
IEP (calculated)
4.925
GRAVY (calculated)
-0.427
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.