Factsheet for VIT_08s0007g04430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2262g00010.t01	Wine grape	cytosol	72.67	92.62
VIT_08s0007g04400.t01	Wine grape	cytosol	79.42	48.15
Solyc04g082790.2.1	Tomato	plastid	62.06	38.68
Solyc10g085790.1.1	Tomato	nucleus	62.38	38.19
PGSC0003DMT400022137	Potato	nucleus	62.06	37.55
KRG99590	Soybean	endoplasmic reticulum, nucleus	56.59	36.07
GSMUA_Achr10P...	Banana	nucleus	54.98	35.48
KRG93607	Soybean	nucleus	54.98	34.55
CDX67556	Canola	cytosol	52.41	34.53
CDY13319	Canola	cytosol	52.73	33.47
Bra028547.1-P	Field mustard	cytosol	52.41	33.2
TraesCS4A01G340500.1	Wheat	cytosol	50.8	33.05
CDX95397	Canola	cytosol	52.41	33.0
TraesCS5D01G532700.1	Wheat	cytosol	50.48	32.91
CDX76225	Canola	cytosol	52.41	32.86
Bra040687.1-P	Field mustard	cytosol	52.41	32.86
TraesCS5B01G534600.1	Wheat	cytosol	50.8	32.78
TraesCSU01G076700.1	Wheat	cytosol	50.16	32.7
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	52.73	32.48
EER95473	Sorghum	cytosol	52.09	32.46
AT3G53110.1	Thale cress	cytosol	51.45	32.26
TraesCS4B01G274200.1	Wheat	cytosol	52.09	32.02
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	52.09	32.02
Zm00001d027728_P001	Maize	extracellular, plasma membrane	51.77	31.94
GSMUA_Achr6P14220_001	Banana	cytosol	53.7	31.93
TraesCS4A01G031800.1	Wheat	cytosol	52.09	31.89
TraesCS4D01G272900.1	Wheat	cytosol	51.77	31.69
VIT_04s0008g00980.t01	Wine grape	cytosol	7.4	27.38
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	26.05	19.61
VIT_11s0016g01920.t01	Wine grape	cytosol	26.05	19.61
VIT_06s0080g00550.t01	Wine grape	cytosol	25.72	19.28
VIT_09s0002g01760.t01	Wine grape	cytosol	26.37	18.81
VIT_09s0002g06660.t01	Wine grape	cytosol	23.15	16.82
VIT_04s0008g05330.t01	Wine grape	cytosol	23.79	16.19
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	23.15	15.0
VIT_15s0046g03200.t01	Wine grape	cytosol	22.83	14.46
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	22.19	12.39
VIT_05s0020g02870.t01	Wine grape	extracellular	13.83	8.85
VIT_04s0008g00990.t01	Wine grape	cytosol	0.96	2.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB55371	ProteinID:CCB55371.1	UniProt:F6HKE9	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004004	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF331	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00021098F6	ArrayExpress:VIT_08s0007g04430	EnsemblPlantsGene:VIT_08s0007g04430
EnsemblPlants:VIT_08s0007g04430.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:18382340..18388500

Molecular Weight (calculated)

34860.4 Da

IEP (calculated)

9.513

GRAVY (calculated)

-0.259

Length

311 amino acids

Sequence
(BLAST)

001: MKVWAVLTDL GLRLWRDPGE KSKPPTAHMQ GKLPDGFKDD SLRIMKDIQR SGAQCQVLLF SATFNDTVKN FVTRIVKDYN QMFVKKEELS LQSVKQYKVK
101: CPDELSKILV IKDKIFEIGQ KLGQTIIFVR TKNSAGMLHK ALVDFGYEVT TIQGALRQED RDKIIKEFKD GLTQVLISTD LLARGFDQSR VNLVVNYDLP
201: LKYGTQAEPD YEVYLHRIGR AGRFGRKGAV FNLLCSDKDN ILISKIENHF GVQIAEVTYP PSPGVPRVGL VVLLPVEGRH VAYCGPISQP RPPTCYEGGV
301: GSGRYAPTEG L

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.