Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67069 | Canola | cytosol | 54.47 | 66.34 |
| CDY11154 | Canola | cytosol | 73.17 | 44.55 |
| VIT_11s0016g01920.t01 | Wine grape | cytosol | 86.18 | 25.67 |
| VIT_04s0008g01000.t01 | Wine grape | cytosol, extracellular | 85.37 | 25.42 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 85.37 | 25.42 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 85.37 | 25.42 |
| Solyc07g040750.1.1 | Tomato | cytosol | 82.11 | 24.46 |
| CDY53867 | Canola | cytosol | 82.93 | 24.17 |
| VIT_09s0002g01760.t01 | Wine grape | cytosol | 85.37 | 24.08 |
| CDY54037 | Canola | cytosol | 51.22 | 23.6 |
| CDX72939 | Canola | mitochondrion, nucleus | 82.11 | 21.67 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 52.85 | 21.17 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 61.79 | 18.05 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 55.28 | 16.39 |
| CDY68148 | Canola | nucleus | 82.11 | 13.67 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 60.98 | 13.64 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 40.65 | 11.68 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 59.35 | 11.41 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 40.65 | 10.94 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 41.46 | 10.62 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 41.46 | 10.39 |
| OQU84655 | Sorghum | cytosol | 52.85 | 8.5 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 34.15 | 8.19 |
| VIT_05s0020g02870.t01 | Wine grape | extracellular | 30.89 | 7.82 |
| Os02t0221300-01 | Rice | cytosol | 55.28 | 7.72 |
| KXG29825 | Sorghum | cytosol | 52.03 | 7.26 |
| Zm00001d016351_P002 | Maize | nucleus | 51.22 | 7.06 |
| VIT_02s0025g04190.t01 | Wine grape | endoplasmic reticulum, vacuole | 31.71 | 7.0 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 60.16 | 5.81 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 60.16 | 5.51 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 59.35 | 5.47 |
| Zm00001d016350_P001 | Maize | vacuole | 10.57 | 2.58 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 2.44 | 0.96 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| CDY49860 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:CBI20639 | ProteinID:CBI20639.3 | UniProt:D7STP0 | InterPro:DEAD/DEAH_box_helicase_dom |
| EMBL:FN595231 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF365 | InterPro:RNA_helicase_DEAD_Q_motif | SUPFAM:SSF52540 |
| UniParc:UPI0001BE1AF0 | ArrayExpress:VIT_04s0008g00990 | EnsemblPlantsGene:VIT_04s0008g00990 | EnsemblPlants:VIT_04s0008g00990.t01 | : | : |
Description
No Description!
Coordinates
chr4:-:855695..856165
Molecular Weight (calculated)
13107.0 Da
IEP (calculated)
8.220
GRAVY (calculated)
0.061
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKENLLRG IYAYGTALPS AIQQKGIVPF CKGLDVIQQA QSGTGKTATF CSGILQQLNE ELTQCQALVL APTRELAQQI EKVMRALGDH LNVKVHSCVG
101: GTVVREDQRI LSAGVHAGTP GCF
101: GTVVREDQRI LSAGVHAGTP GCF
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.