Factsheet for VIT_04s0008g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01920.t01	Wine grape	cytosol	96.85	96.85
GSMUA_Achr2P19480_001	Banana	cytosol	85.71	95.68
GSMUA_Achr8P24670_001	Banana	cytosol	86.92	95.48
GSMUA_AchrUn_...	Banana	cytosol	85.47	95.41
EES04512	Sorghum	cytosol	94.67	95.37
Zm00001d015251_P001	Maize	extracellular	94.67	95.37
Zm00001d036480_P001	Maize	plasma membrane, plastid	94.92	94.69
Zm00001d014673_P001	Maize	plastid	94.67	94.44
Os06t0701100-02	Rice	extracellular, nucleus, plastid	94.67	94.44
TraesCS6B01G144100.1	Wheat	cytosol	43.58	94.24
Os02t0146600-01	Rice	plastid	94.43	94.2
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	94.19	94.19
GSMUA_Achr10P...	Banana	cytosol	87.17	93.99
TraesCS7A01G419400.1	Wheat	cytosol	94.19	93.96
TraesCS7B01G320000.1	Wheat	cytosol	94.19	93.96
TraesCS7D01G412200.1	Wheat	golgi, nucleus	94.19	93.96
GSMUA_Achr7P19690_001	Banana	cytosol	79.42	92.92
VIT_09s0002g01760.t01	Wine grape	cytosol	95.16	90.14
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	94.92	88.69
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	94.92	88.69
VIT_04s0008g00990.t01	Wine grape	cytosol	25.42	85.37
VIT_04s0008g00980.t01	Wine grape	cytosol	17.19	84.52
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	86.2	81.46
HORVU6Hr1G020910.1	Barley	cytosol	94.67	77.43
OQU76995	Sorghum	cytosol	94.67	75.63
TraesCS6B01G144000.1	Wheat	golgi	94.92	71.14
VIT_06s0080g00550.t01	Wine grape	cytosol	61.74	61.45
VIT_09s0002g06660.t01	Wine grape	cytosol	35.59	34.35
VIT_00s2262g00010.t01	Wine grape	cytosol	18.89	31.97
VIT_04s0008g05330.t01	Wine grape	cytosol	35.35	31.95
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	35.59	30.62
VIT_15s0046g03200.t01	Wine grape	cytosol	35.84	30.14
VIT_08s0007g04400.t01	Wine grape	cytosol	34.38	27.68
VIT_08s0007g04430.t01	Wine grape	cytosol	19.61	26.05
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	30.02	22.26
VIT_05s0020g02870.t01	Wine grape	extracellular	25.42	21.6

Protein Annotations

EntrezGene:100249159	wikigene:100249159	MapMan:17.4.2.1	Gene3D:3.40.50.300	EMBL:AM465544	ProteinID:CAN61608
ProteinID:CAN61608.1	ProteinID:CBI20640	ProteinID:CBI20640.3	UniProt:D7STP1	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN595231
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006413	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100249159	wikigene:LOC100249159	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00015C895C	ArrayExpress:VIT_04s0008g01000
EnsemblPlantsGene:VIT_04s0008g01000	EnsemblPlants:VIT_04s0008g01000.t01	unigene:Vvi.3388	RefSeq:XP_002278119	RefSeq:XP_002278119.1	:

Description

No Description!

Coordinates

chr4:+:861239..863373

Molecular Weight (calculated)

46875.4 Da

IEP (calculated)

5.219

GRAVY (calculated)

-0.226

Length

413 amino acids

Sequence
(BLAST)

001: MAGLAPEGSQ FDARQYDSKM NELLGTDGQD FFTSYDEVYE SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFIKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLVECQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH VVVGTPGRVF DMLRRQSLRP DYIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTKDDERM LFDIQRFYNV
401: VVEELPSNVA DLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.