Factsheet for TraesCS6A01G116200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	99.55	99.55
TraesCS7A01G419400.1	Wheat	cytosol	92.53	98.79
Os06t0701100-02	Rice	extracellular, nucleus, plastid	91.63	97.83
GSMUA_Achr8P24670_001	Banana	cytosol	80.77	94.95
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	88.69	94.92
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	88.24	94.43
VIT_11s0016g01920.t01	Wine grape	cytosol	88.24	94.43
KRH37426	Soybean	cytosol, endoplasmic reticulum	88.01	94.19
KRH12430	Soybean	cytosol	88.01	94.19
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	87.1	93.22
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	86.88	92.98
KRH23270	Soybean	cytosol	86.65	92.74
KRH10048	Soybean	cytosol, endoplasmic reticulum	86.65	92.74
KRH47074	Soybean	nucleus	86.43	92.49
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	85.97	92.01
GSMUA_Achr10P...	Banana	cytosol	79.64	91.91
PGSC0003DMT400012518	Potato	cytosol	85.52	91.53
GSMUA_Achr7P19690_001	Banana	cytosol	72.85	91.22
KRH44102	Soybean	nucleus	86.65	90.97
VIT_09s0002g01760.t01	Wine grape	cytosol	86.88	88.07
HORVU6Hr1G020910.1	Barley	cytosol	93.67	81.98
TraesCS6B01G144000.1	Wheat	golgi	95.48	76.59
TraesCS2A01G552800.1	Wheat	cytosol	55.88	66.94
TraesCS6A01G416700.1	Wheat	nucleus	58.14	62.23
TraesCS6A01G186600.1	Wheat	cytosol	54.75	44.0
TraesCS1A01G443400.1	Wheat	cytosol	34.39	35.02
TraesCS3A01G200100.1	Wheat	cytosol	34.16	34.63
TraesCS2A01G370200.2	Wheat	cytosol	35.29	31.14
TraesCS6A01G236800.1	Wheat	cytosol	35.29	29.83
TraesCS1A01G174600.1	Wheat	cytosol	33.94	28.57
TraesCS4A01G340500.1	Wheat	cytosol	29.86	27.62
TraesCS4A01G031800.1	Wheat	cytosol	31.67	27.56
TraesCS6A01G186800.1	Wheat	cytosol	56.33	19.54
TraesCS6A01G234000.1	Wheat	mitochondrion	25.34	18.64

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G116200
EnsemblPlants:TraesCS6A01G116200.1	TIGR:cd00079	TIGR:cd00268	:	:	:

Description

No Description!

Coordinates

chr6A:+:86115842..86118789

Molecular Weight (calculated)

50031.6 Da

IEP (calculated)

5.368

GRAVY (calculated)

-0.145

Length

442 amino acids

Sequence
(BLAST)

001: MYAINGCLVP KFLPLLSVNM LLFLFNTAMA GMAPEGSQFD AKQYDSKMTE LLNQGDTGEF FTSYDEVHES FDDMGLQENL LRGIYAYGFE KPSAIQQRGI
101: VPFCKGLDVI QQAQSGTGKT ATFCSGILQQ LDYGLVECQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILASGVHV VVGTPGRVFD
201: MLRRQSLRPD NIKMFVLDEA DEMLSRGFKD QIYDIFQLLP SKIQVGVFSA TMPPEALEIT RKFMNKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLDTLC
301: DLYETLAITQ SVIFVNTRRK VDWLTDKMRG RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INYDLPTQPE NYLHRIGRSG
401: RFGRKGVAIN FVTREDERML FDIQKFYNVV IEELPANVAD LL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.