Factsheet for TraesCS6A01G234000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G059910.1	Barley	mitochondrion	98.34	98.34
TraesCS6B01G262800.1	Wheat	mitochondrion	98.0	98.0
TraesCS6D01G216300.1	Wheat	mitochondrion	87.69	97.96
Os02t0636300-01	Rice	nucleus	81.53	85.51
Os03t0219700-01	Rice	plastid	80.2	84.12
OQU85369	Sorghum	mitochondrion, plastid	79.87	83.77
Zm00001d017345_P002	Maize	plastid	80.37	76.06
GSMUA_Achr1P01890_001	Banana	plastid	56.24	63.89
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	57.9	62.48
KRH43643	Soybean	nucleus	55.41	59.25
KRH13813	Soybean	nucleus	54.91	58.72
AT1G12770.2	Thale cress	mitochondrion, plastid	53.41	58.26
Solyc08g080550.1.1	Tomato	nucleus	53.08	58.21
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	53.08	58.21
TraesCS7A01G419400.1	Wheat	cytosol	18.64	27.05
TraesCS2A01G552800.1	Wheat	cytosol	16.47	26.83
TraesCS1A01G443400.1	Wheat	cytosol	18.47	25.58
TraesCS6A01G416700.1	Wheat	nucleus	17.47	25.42
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	18.64	25.34
TraesCS3A01G200100.1	Wheat	cytosol	18.14	25.0
TraesCS4A01G340500.1	Wheat	cytosol	16.97	21.34
TraesCS2A01G370200.2	Wheat	cytosol	17.47	20.96
TraesCS6A01G236800.1	Wheat	cytosol	18.14	20.84
TraesCS1A01G174600.1	Wheat	cytosol	17.97	20.57
TraesCS4A01G031800.1	Wheat	cytosol	16.81	19.88
TraesCS6A01G186600.1	Wheat	cytosol	14.81	16.18
TraesCS6A01G186800.1	Wheat	cytosol	15.81	7.46

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009663	GO:GO:0009987	GO:GO:0010497
GO:GO:0016043	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF537	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6A01G234000	EnsemblPlants:TraesCS6A01G234000.1	TIGR:cd00079	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:441499851..441501656

Molecular Weight (calculated)

66322.3 Da

IEP (calculated)

10.292

GRAVY (calculated)

-0.370

Length

601 amino acids

Sequence
(BLAST)

001: MRLIIGQVHR NVLALASSRS CFVIGDHLPF RMLSMPRASG FHQTAWRGSQ TVKDSGSTLT LASLEVQSKA DYVKKERVPQ SKADYVKKER EPQSKADYVK
101: KERGPRTGEP KPSSRDSGFS VKPKKVSSLS LKPAKSALPK PPVVKKKLKI DEALFSASSF EELGLPPLLI DRLNKEGLTS PTEVQSASIP VISQRHDAVI
201: QSYTGSGKTL AYLLPILSEI GPLKRAREQG NSEKRSGIEA VVVAPSRELG MQIVREVEKI LGPDDKRLVQ QLVGGANRSR QEEALKKNKP IIVVGTPGRI
301: SEISAAGKLQ THNCRFLVLD EVDQLLSFNY REDMHRILEH VGRKPSTSSS SHILGPLARR SERQTILVSA TVPFSVIRAA RSWGHDPVLV RAKSVVPLDS
401: ITVPRPMLSQ GDPNSDSPTM SVNQAAVDSL PPSLEHYYCT TKAHHKVDTL RRCIHALEAE TVIAFMNNTK PLKDVVFKLE ARGMKAIELH GDLGKLARST
501: VLKKFKAGEF RVLVTNELSA RGLDIPECDL VINLDLPTDS THYAHRAGRT GRLGRKGTVV SICEESEAFI MRKMRKQLGV AIKPCEFTEG QITVHKEEDV
601: E

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.