Factsheet for Solyc08g080550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	97.81	97.81
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	70.44	69.3
KRH13813	Soybean	nucleus	66.24	64.59
KRH43643	Soybean	nucleus	65.15	63.52
AT1G12770.2	Thale cress	mitochondrion, plastid	62.04	61.71
OQU85369	Sorghum	mitochondrion, plastid	60.22	57.59
Os02t0636300-01	Rice	nucleus	59.49	56.89
Os03t0219700-01	Rice	plastid	58.94	56.37
GSMUA_Achr1P01890_001	Banana	plastid	52.01	53.88
HORVU6Hr1G059910.1	Barley	mitochondrion	58.21	53.08
TraesCS6A01G234000.1	Wheat	mitochondrion	58.21	53.08
TraesCS6B01G262800.1	Wheat	mitochondrion	58.03	52.91
TraesCS6D01G216300.1	Wheat	mitochondrion	51.28	52.23
Zm00001d017345_P002	Maize	plastid	60.4	52.13
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	20.07	27.92
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	20.8	27.6
Solyc08g062800.2.1	Tomato	extracellular, plastid	20.26	26.88
Solyc12g095990.1.1	Tomato	nucleus	20.07	26.63
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	18.98	26.6
Solyc07g040750.1.1	Tomato	cytosol	19.71	26.15
Solyc01g079800.2.1	Tomato	plastid	21.35	25.49
Solyc06g066060.2.1	Tomato	nucleus	18.8	25.12
Solyc04g082790.2.1	Tomato	plastid	19.89	21.84
Solyc10g085790.1.1	Tomato	nucleus	20.07	21.65
Solyc08g061000.2.1	Tomato	nucleus	19.16	21.65
Solyc10g017530.2.1	Tomato	nucleus	18.43	20.57
Solyc01g094350.2.1	Tomato	nucleus	18.25	20.08
Solyc05g048850.2.1	Tomato	mitochondrion	18.25	18.62

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CP55	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF537
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc08g080550.1
EnsemblPlants:Solyc08g080550.1.1	UniParc:UPI000276BADA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:63825283..63826929

Molecular Weight (calculated)

59667.7 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.139

Length

548 amino acids

Sequence
(BLAST)

001: MPALVLTRAL LLIGDSLAFR KATQFTRIAP SQGNVRFLSS SGSLTLASLG LKSEVKTVSA NEKNKLQQGI STIEVPKSRE KKRVSGNKQG LVKEKNPVDI
101: MTAPFAAKSF SELGLPPLLV ERLETEGFTI PTDVQAAAVP TVLKNHDVVI QSYTGSGKTL AYLLPILSRV GPLKEELPDG YETGNKIDIE AVIVAPSREL
201: GMQIVREVEK LLGPANKKLV QQLVGGANRS RQEDALKKNK PDIVVGTPGR IAEISAAGKL PTHGCRYLVL DEIDQLLAFT FREDMKRILD HVGRRPGARG
301: GESNSPLVKR AARQTIMVSA TVPFSVIRAA RSWGCDPLLI QANKVVPLES VTPSGSVNIP GTPSTTDSSS SVQPMPDVQS LPPNLQHYYT ITRIQHKVDM
401: LRRCVHALDA KCVIAFMNHT KQLKDAVFKL EARGMNAAEL HGDLSKLVRS TILKKFRNGE IRVLLTNELS ARGLDLPECD LVVNLGLPTD SVHYAHRAGR
501: TGRLGRKGTV VTICEESEVF VVKKLQKQLS LSIEACEFSE GNLVIIED

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.