Factsheet for GSMUA_Achr1P01890_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0219700-01	Rice	plastid	65.78	60.73
Os02t0636300-01	Rice	nucleus	65.6	60.56
OQU85369	Sorghum	mitochondrion, plastid	65.41	60.38
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	59.92	56.91
HORVU6Hr1G059910.1	Barley	mitochondrion	64.08	56.41
TraesCS6B01G262800.1	Wheat	mitochondrion	63.89	56.24
TraesCS6A01G234000.1	Wheat	mitochondrion	63.89	56.24
Zm00001d017345_P002	Maize	plastid	65.97	54.96
TraesCS6D01G216300.1	Wheat	mitochondrion	54.25	53.35
Solyc08g080550.1.1	Tomato	nucleus	53.88	52.01
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	53.31	51.46
KRH13813	Soybean	nucleus	54.63	51.42
KRH43643	Soybean	nucleus	54.44	51.25
AT1G12770.2	Thale cress	mitochondrion, plastid	52.36	50.27
GSMUA_Achr2P19480_001	Banana	cytosol	18.15	25.95
GSMUA_AchrUn_...	Banana	cytosol	18.15	25.95
GSMUA_Achr7P19690_001	Banana	cytosol	17.01	25.5
GSMUA_Achr8P24670_001	Banana	cytosol	17.77	25.0
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	19.47	24.94
GSMUA_Achr10P...	Banana	cytosol	17.58	24.28
GSMUA_Achr3P27120_001	Banana	cytosol	15.12	24.02
GSMUA_Achr9P23810_001	Banana	cytosol	17.2	23.45
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	18.15	21.97
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	9.45	21.83
GSMUA_Achr10P...	Banana	nucleus	19.09	20.95
GSMUA_Achr8P05380_001	Banana	cytosol	18.15	20.73
GSMUA_Achr6P14220_001	Banana	cytosol	19.47	19.69
GSMUA_Achr9P13950_001	Banana	mitochondrion	11.15	19.22
GSMUA_Achr2P10560_001	Banana	cytosol	17.58	19.14
GSMUA_Achr5P12220_001	Banana	cytosol	17.77	19.11
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	17.77	18.88
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	17.39	18.7
GSMUA_Achr6P27990_001	Banana	plastid	17.01	18.56
GSMUA_Achr11P...	Banana	cytosol	17.77	16.64

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009663	GO:GO:0009987	GO:GO:0010497
GO:GO:0016043	EnsemblPlantsGene:GSMUA_Achr1G01890_001	EnsemblPlants:GSMUA_Achr1P01890_001	EnsemblPlants:GSMUA_Achr1T01890_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0RW97	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF537
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002964BD7	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 47B [Source:GMGC_GENE;Acc:GSMUA_Achr1G01890_001]

Coordinates

chr1:+:1563944..1566181

Molecular Weight (calculated)

57961.4 Da

IEP (calculated)

10.276

GRAVY (calculated)

-0.243

Length

529 amino acids

Sequence
(BLAST)

001: MELIIGQSHS GVLALASSRS LLGGRFALRC LSALRTTGFH KAAHPKNRAE APDSSLSLSS LGFKPQIEPG RKKDRSFVDI GTLKPAATKV SPARDKPIKL
101: RKAKLQIDES LFSAKSFAEL GLSPRLIDRL NEAGLTRVSD DGMTPEQKPG IDAVIVAPSR ELGMQIVREV ERLLGPADKK LVQQLVGGAN RSRQEEALKK
201: NKPIIVVGTP GRIAEISAAG KLHTHGCQFL VLDEVDQLLS FNYREDMHRI LEHVGRRSGT KPSGIMGPLA RRTDRQTILV SATIPFSVVR AARNWGRDPL
301: LVRAKSVVPL DSLPAPGPGV LASDSETTST TSSVTQGATE SLPPSLKHYY CVSKIQHKVD TLRRCVHALD AQTVIVFMNN TKPLKDVVFK LEARGIKAEE
401: LHGDLSKLAR ATTLKKFKEG ELRVLVTNEL SARGLDVPEC DLVVNLDLPT DSIHYAHRAG RTGRLGRKGN VVTICEEPEV FVNKKIYRAV STLNDLLAMG
501: MHDLAWRISY FLLHNPTRQV DMDLANDCK

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.