Factsheet for VIT_00s2262g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04430.t01	Wine grape	cytosol	92.62	72.67
VIT_08s0007g04400.t01	Wine grape	cytosol	91.39	43.47
Solyc04g082790.2.1	Tomato	plastid	78.69	38.48
Solyc10g085790.1.1	Tomato	nucleus	79.51	38.19
PGSC0003DMT400022137	Potato	nucleus	78.69	37.35
GSMUA_Achr10P...	Banana	nucleus	70.08	35.48
KRG99590	Soybean	endoplasmic reticulum, nucleus	70.08	35.04
CDX67556	Canola	cytosol	67.62	34.96
CDY13319	Canola	cytosol	67.62	33.67
KRG93607	Soybean	nucleus	68.03	33.54
Bra028547.1-P	Field mustard	cytosol	67.21	33.4
CDX95397	Canola	cytosol	66.8	33.0
CDX76225	Canola	cytosol	66.8	32.86
Bra040687.1-P	Field mustard	cytosol	66.8	32.86
TraesCS4A01G340500.1	Wheat	cytosol	63.52	32.43
TraesCS5D01G532700.1	Wheat	cytosol	63.11	32.29
EER95473	Sorghum	cytosol	65.98	32.26
TraesCS5B01G534600.1	Wheat	cytosol	63.52	32.16
GSMUA_Achr6P14220_001	Banana	cytosol	68.85	32.12
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	66.39	32.08
TraesCSU01G076700.1	Wheat	cytosol	62.7	32.08
Zm00001d027728_P001	Maize	extracellular, plasma membrane	65.98	31.94
AT3G53110.1	Thale cress	cytosol	64.75	31.85
TraesCS4B01G274200.1	Wheat	cytosol	65.57	31.62
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	65.57	31.62
TraesCS4A01G031800.1	Wheat	cytosol	65.57	31.5
TraesCS4D01G272900.1	Wheat	cytosol	65.16	31.3
VIT_04s0008g00980.t01	Wine grape	cytosol	9.43	27.38
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	31.97	18.89
VIT_11s0016g01920.t01	Wine grape	cytosol	31.97	18.89
VIT_06s0080g00550.t01	Wine grape	cytosol	31.97	18.8
VIT_09s0002g01760.t01	Wine grape	cytosol	32.38	18.12
VIT_09s0002g06660.t01	Wine grape	cytosol	28.69	16.36
VIT_04s0008g05330.t01	Wine grape	cytosol	29.1	15.54
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	29.1	14.79
VIT_15s0046g03200.t01	Wine grape	cytosol	28.69	14.26
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	27.46	12.03
VIT_05s0020g02870.t01	Wine grape	extracellular	16.8	8.44
VIT_04s0008g00990.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100854880	wikigene:100854880	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB59202	ProteinID:CCB59202.1
UniProt:F6HWY8	EMBL:FN596419	GO:GO:0003674	GO:GO:0003824	GO:GO:0004004	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100854880	wikigene:LOC100854880	InterPro:P-loop_NTPase
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000210A4B8	ArrayExpress:VIT_00s2262g00010	EnsemblPlantsGene:VIT_00s2262g00010	EnsemblPlants:VIT_00s2262g00010.t01	RefSeq:XP_003635631
RefSeq:XP_003635631.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:41485749..41488053

Molecular Weight (calculated)

27802.5 Da

IEP (calculated)

7.382

GRAVY (calculated)

-0.298

Length

244 amino acids

Sequence
(BLAST)

001: MQDGFKDDSL RIMKDIERSG AQCQVLLFSA TFNDTVKNFV TRIVKDYNQM FVKKEELSLQ SVKQYKVKCP DELSKILVIK DKIFELGQKL GQTIIFVRTK
101: NSAGMLHKAL VDFGYEVTTI QGALRQEDRD KIIKEFKDGL TQVLISTDLL ARGFDQSRVN LVVNYDLPLK YGTQAEPDYE VYLHRIGRAG RFGRKGAVFN
201: LLCSDKDNIL ISKIENHFGV QIAEIPSWQN DDDFEAAMKD AGLC

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.