Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 15276429
plastid: 17189339
cytosol: 19685898
plastid: 21433289
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 15276429 doi
MM Khan, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036480_P001 Maize plasma membrane, plastid 97.58 97.58
Zm00001d014673_P001 Maize plastid 97.34 97.34
Os06t0701100-02 Rice extracellular, nucleus, plastid 97.1 97.1
EES04512 Sorghum cytosol 96.14 97.07
Zm00001d015251_P001 Maize extracellular 95.17 96.1
VIT_04s0008g01000.t01 Wine grape cytosol, extracellular 94.2 94.43
GSMUA_Achr8P24670_001 Banana cytosol 85.75 94.41
VIT_11s0016g01920.t01 Wine grape cytosol 93.72 93.95
GSMUA_Achr6P01750_001 Banana cytosol, plasma membrane 93.48 93.7
KRH12430 Soybean cytosol 93.24 93.46
KRH10048 Soybean cytosol, endoplasmic reticulum 93.0 93.22
KRH23270 Soybean cytosol 93.0 93.22
KRH37426 Soybean cytosol, endoplasmic reticulum 93.0 93.22
KRH19215 Soybean cytosol, endoplasmic reticulum, nucleus 92.75 92.98
KRH02682 Soybean cytosol, endoplasmic reticulum, nucleus 92.51 92.74
KRH47074 Soybean nucleus 91.79 92.01
Solyc06g062800.2.1 Tomato cytosol, nucleus, unclear 91.55 91.77
GSMUA_Achr10P... Banana cytosol 84.54 91.38
PGSC0003DMT400012518 Potato cytosol 91.06 91.28
GSMUA_Achr7P19690_001 Banana cytosol 77.29 90.65
KRH44102 Soybean nucleus 92.03 90.5
VIT_09s0002g01760.t01 Wine grape cytosol 92.51 87.84
OQU76995 Sorghum cytosol 97.83 78.34
Os03t0566800-01 Rice cytosol, nucleus, plasma membrane 62.32 63.86
Os01t0639100-01 Rice nucleus 61.84 63.37
Os01t0549700-01 Rice cytosol, plastid 36.47 34.95
Os01t0550000-01 Rice cytosol, nucleus, plasma membrane 36.23 34.72
Os04t0533000-02 Rice cytosol 37.2 30.92
Os02t0641800-02 Rice plasma membrane, plastid 36.96 30.12
Os10t0503700-01 Rice plasma membrane 36.72 29.17
Os02t0221300-01 Rice cytosol 57.25 26.9
Os03t0158200-01 Rice cytosol, plasma membrane, plastid 32.37 26.53
Os01t0970600-01 Rice plastid 24.15 21.1
Os03t0219700-01 Rice plastid 26.57 19.2
Os02t0636300-01 Rice nucleus 26.57 19.2
Protein Annotations
MapMan:17.4.2.1Gene3D:3.40.50.300EntrezGene:4328286EMBL:AB046414EMBL:AK073620ProteinID:BAB21259.1
ProteinID:BAD13081.1ProteinID:BAF07792.1ProteinID:BAS76965.1InterPro:DEAD/DEAH_box_helicase_domProteinID:EEE56296.1GO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003743GO:GO:0003824GO:GO:0004004
GO:GO:0004386GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139GO:GO:0006412
GO:GO:0006413GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0010468GO:GO:0010501GO:GO:0016787GO:GO:0019538InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EMBL:KC140119EnsemblPlantsGene:Os02g0146600EnsemblPlants:Os02t0146600-01
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039PFscan:PS51192PFscan:PS51194
PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF365UniProt:Q6Z2Z4InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI0000350420RefSeq:XP_015626460.1:
Description
EUKARYOTIC INITIATION FACTOR 4A-2Similar to Eukaryotic initiation factor 4A (eIF4A) (eIF-4A). (Os02t0146600-01)
Coordinates
chr2:+:2557668..2561013
Molecular Weight (calculated)
47140.7 Da
IEP (calculated)
5.350
GRAVY (calculated)
-0.271
Length
414 amino acids
Sequence
(BLAST)
001: MAGMAPEGSQ FDAKHYDSKM QELLHQGDNE EFFTSYDEVF ESFDDMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLDYGLVEC QSLVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILASGV HVVVGTPGRV FDMLRRQSLR PDHIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPPKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VEKEDWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTRDDER MLFDIQRFYN
401: VTIEELPANV ADLL
Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.