Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
15276429
plastid: 17189339 cytosol: 19685898 plastid: 21433289 nucleus: 23777608 plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
19685898
doi
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID:
15276429
doi
Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d036480_P001 | Maize | plasma membrane, plastid | 97.58 | 97.58 |
Zm00001d014673_P001 | Maize | plastid | 97.34 | 97.34 |
Os06t0701100-02 | Rice | extracellular, nucleus, plastid | 97.1 | 97.1 |
EES04512 | Sorghum | cytosol | 96.14 | 97.07 |
Zm00001d015251_P001 | Maize | extracellular | 95.17 | 96.1 |
VIT_04s0008g01000.t01 | Wine grape | cytosol, extracellular | 94.2 | 94.43 |
GSMUA_Achr8P24670_001 | Banana | cytosol | 85.75 | 94.41 |
VIT_11s0016g01920.t01 | Wine grape | cytosol | 93.72 | 93.95 |
GSMUA_Achr6P01750_001 | Banana | cytosol, plasma membrane | 93.48 | 93.7 |
KRH12430 | Soybean | cytosol | 93.24 | 93.46 |
KRH10048 | Soybean | cytosol, endoplasmic reticulum | 93.0 | 93.22 |
KRH23270 | Soybean | cytosol | 93.0 | 93.22 |
KRH37426 | Soybean | cytosol, endoplasmic reticulum | 93.0 | 93.22 |
KRH19215 | Soybean | cytosol, endoplasmic reticulum, nucleus | 92.75 | 92.98 |
KRH02682 | Soybean | cytosol, endoplasmic reticulum, nucleus | 92.51 | 92.74 |
KRH47074 | Soybean | nucleus | 91.79 | 92.01 |
Solyc06g062800.2.1 | Tomato | cytosol, nucleus, unclear | 91.55 | 91.77 |
GSMUA_Achr10P... | Banana | cytosol | 84.54 | 91.38 |
PGSC0003DMT400012518 | Potato | cytosol | 91.06 | 91.28 |
GSMUA_Achr7P19690_001 | Banana | cytosol | 77.29 | 90.65 |
KRH44102 | Soybean | nucleus | 92.03 | 90.5 |
VIT_09s0002g01760.t01 | Wine grape | cytosol | 92.51 | 87.84 |
OQU76995 | Sorghum | cytosol | 97.83 | 78.34 |
Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 62.32 | 63.86 |
Os01t0639100-01 | Rice | nucleus | 61.84 | 63.37 |
Os01t0549700-01 | Rice | cytosol, plastid | 36.47 | 34.95 |
Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 36.23 | 34.72 |
Os04t0533000-02 | Rice | cytosol | 37.2 | 30.92 |
Os02t0641800-02 | Rice | plasma membrane, plastid | 36.96 | 30.12 |
Os10t0503700-01 | Rice | plasma membrane | 36.72 | 29.17 |
Os02t0221300-01 | Rice | cytosol | 57.25 | 26.9 |
Os03t0158200-01 | Rice | cytosol, plasma membrane, plastid | 32.37 | 26.53 |
Os01t0970600-01 | Rice | plastid | 24.15 | 21.1 |
Os03t0219700-01 | Rice | plastid | 26.57 | 19.2 |
Os02t0636300-01 | Rice | nucleus | 26.57 | 19.2 |
Protein Annotations
MapMan:17.4.2.1 | Gene3D:3.40.50.300 | EntrezGene:4328286 | EMBL:AB046414 | EMBL:AK073620 | ProteinID:BAB21259.1 |
ProteinID:BAD13081.1 | ProteinID:BAF07792.1 | ProteinID:BAS76965.1 | InterPro:DEAD/DEAH_box_helicase_dom | ProteinID:EEE56296.1 | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003824 | GO:GO:0004004 |
GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 |
GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EMBL:KC140119 | EnsemblPlantsGene:Os02g0146600 | EnsemblPlants:Os02t0146600-01 |
InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF365 | UniProt:Q6Z2Z4 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0000350420 | RefSeq:XP_015626460.1 | : |
Description
EUKARYOTIC INITIATION FACTOR 4A-2Similar to Eukaryotic initiation factor 4A (eIF4A) (eIF-4A). (Os02t0146600-01)
Coordinates
chr2:+:2557668..2561013
Molecular Weight (calculated)
47140.7 Da
IEP (calculated)
5.350
GRAVY (calculated)
-0.271
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMAPEGSQ FDAKHYDSKM QELLHQGDNE EFFTSYDEVF ESFDDMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLDYGLVEC QSLVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILASGV HVVVGTPGRV FDMLRRQSLR PDHIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPPKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VEKEDWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTRDDER MLFDIQRFYN
401: VTIEELPANV ADLL
101: QQLDYGLVEC QSLVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILASGV HVVVGTPGRV FDMLRRQSLR PDHIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPPKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VEKEDWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTRDDER MLFDIQRFYN
401: VTIEELPANV ADLL
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.