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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 27992503
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0550000-01 Rice cytosol, nucleus, plasma membrane 99.31 99.31
KXG32708 Sorghum cytosol 94.44 95.33
TraesCS3B01G224400.1 Wheat cytosol 93.98 94.86
TraesCS3D01G204400.1 Wheat cytosol 93.75 94.63
TraesCS3A01G200100.1 Wheat cytosol 93.29 92.43
VIT_09s0002g06660.t01 Wine grape cytosol 89.58 90.42
Solyc06g066060.2.1 Tomato nucleus 85.19 89.76
AT5G11170.1 Thale cress cytosol 88.43 89.46
PGSC0003DMT400053566 Potato cytosol 88.43 89.46
PGSC0003DMT400052757 Potato cytosol 88.19 89.02
KRH52452 Soybean nucleus 86.57 87.59
KRH47464 Soybean nucleus 86.34 87.56
KRH61783 Soybean cytosol 86.34 87.35
KRH44441 Soybean cytosol, nucleus 86.11 87.32
Bra023311.1-P Field mustard cytosol 85.65 86.65
Bra023312.1-P Field mustard cytosol 85.42 84.63
CDY51112 Canola cytosol 86.11 84.55
CDX85725 Canola cytosol 86.11 84.16
GSMUA_Achr8P05380_001 Banana cytosol 90.05 84.02
CDX70383 Canola cytosol 86.57 83.67
VIT_04s0008g05330.t01 Wine grape cytosol 87.96 83.15
Bra008984.1-P Field mustard cytosol 80.56 81.69
Solyc08g061000.2.1 Tomato nucleus 88.43 78.76
AT5G11200.2 Thale cress cytosol 88.43 78.6
CDY71952 Canola cytosol 74.31 76.98
CDX69778 Canola cytosol 86.57 75.56
CDX85726 Canola cytosol 85.65 75.51
CDX78412 Canola cytosol 86.81 75.45
Bra008983.1-P Field mustard cytosol 81.94 75.0
CDY51111 Canola cytosol 41.9 72.69
CDX69777 Canola cytosol, nucleus, plasma membrane 86.81 71.7
GSMUA_Achr3P26010_001 Banana endoplasmic reticulum 81.25 70.48
Zm00001d011149_P002 Maize cytosol 26.39 68.67
Zm00001d011150_P005 Maize cytosol 71.06 66.31
Bra006091.1-P Field mustard cytosol 79.4 65.46
CDY56825 Canola cytosol 29.63 56.14
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 29.63 42.81
Os06t0701100-02 Rice extracellular, nucleus, plastid 34.95 36.47
Os02t0146600-01 Rice plastid 34.95 36.47
Os03t0566800-01 Rice cytosol, nucleus, plasma membrane 31.94 34.16
Os01t0639100-01 Rice nucleus 31.71 33.91
Os04t0533000-02 Rice cytosol 33.8 29.32
Os02t0641800-02 Rice plasma membrane, plastid 33.8 28.74
Os10t0503700-01 Rice plasma membrane 33.8 28.02
Os03t0158200-01 Rice cytosol, plasma membrane, plastid 28.01 23.96
Os01t0970600-01 Rice plastid 21.53 19.62
Os03t0219700-01 Rice plastid 24.77 18.67
Os02t0636300-01 Rice nucleus 24.77 18.67
Os02t0221300-01 Rice cytosol 28.94 14.19
Protein Annotations
MapMan:16.11.1.3MapMan:16.4.7.1.1Gene3D:3.40.50.300EntrezGene:4326192EMBL:AK067431ProteinID:BAD88053.1
ProteinID:BAF05211.1ProteinID:BAS72632.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000003GO:GO:0000166
GO:GO:0000398GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004004
GO:GO:0004386GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0005730GO:GO:0005737GO:GO:0006139
GO:GO:0006397GO:GO:0006406GO:GO:0006810GO:GO:0006950GO:GO:0006974GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009555GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0010468GO:GO:0010501GO:GO:0016787GO:GO:0048653GO:GO:0051028
EMBL:GQ478227InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014
EnsemblPlantsGene:Os01g0549700EnsemblPlants:Os01t0549700-01InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFscan:PS51192
PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF530UniProt:Q0JM17InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI00004C2B69RefSeq:XP_015621977.1SEG:seg
Description
API5-INTERACTING PROTEIN 1Similar to RNA helicase (Fragment). (Os01t0549700-01);Similar to cDNA clone:J033114G10, full insert sequence. (Os01t0549700-02);Similar to predicted protein. (Os01t0549700-03)
Coordinates
chr1:+:20540847..20547073
Molecular Weight (calculated)
48656.5 Da
IEP (calculated)
5.472
GRAVY (calculated)
-0.246
Length
432 amino acids
Sequence
(BLAST)
001: MAEAEVKDNE VYEEDLVDYE EEVENGTDGG ANAANASADV VKKGYVGIHS SGFRDFLLKP ELLRAIQDCG FEHPSEVQHE CIPQAILGMD VICQAKSGMG
101: KTAVFVLSSL QQIDPVAGQV GALVLCHTRE LAYQICHEFE RFSKYLPEVK VAVFYGGVHI KKHKDLLKND CPHIVVGTPG RILALAREKD LSLKNVRHFI
201: LDECDKMLDS LDMRRDVQEI FKMTPHDKQV MMFSATLSKE IRPVCKKFMQ DPMEIYVDDE AKLTLHGLVQ HYIKLSEAEK NRKLNDLLDA LDFNQVVIFV
301: KSVSRAAELN KLLCECNFPA ISIHSGMTQE ERLTRYKNFK EGHKRILVAT DLVGRGIDIE RVNIVINYDM PDSADSYLHR VGRAGRFGTK GLAITFVSSA
401: SDSDVLNQVQ ERFEVDIKEL PEQIDTSTYM PS
Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.