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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, secretory
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44441 Soybean cytosol, nucleus 99.77 99.77
PGSC0003DMT400053566 Potato cytosol 92.96 92.74
KRH52452 Soybean nucleus 92.25 92.04
KRH61783 Soybean cytosol 92.02 91.8
VIT_09s0002g06660.t01 Wine grape cytosol 91.78 91.36
PGSC0003DMT400052757 Potato cytosol 91.55 91.12
Solyc06g066060.2.1 Tomato nucleus 87.32 90.73
AT5G11170.1 Thale cress cytosol 90.61 90.4
KXG32708 Sorghum cytosol 89.2 88.78
KXG22711 Sorghum cytosol 89.2 88.58
Bra023311.1-P Field mustard cytosol 88.26 88.06
TraesCS3B01G224400.1 Wheat cytosol 87.79 87.38
TraesCS1B01G477500.1 Wheat cytosol 88.26 87.24
TraesCS3D01G204400.1 Wheat cytosol 87.56 87.15
TraesCS1A01G443400.1 Wheat cytosol 88.26 86.64
Os01t0550000-01 Rice cytosol, nucleus, plasma membrane 87.79 86.57
TraesCS1D01G451300.1 Wheat cytosol 85.92 86.52
Bra023312.1-P Field mustard cytosol 88.5 86.47
Os01t0549700-01 Rice cytosol, plastid 87.56 86.34
CDY51112 Canola cytosol 88.97 86.14
CDX85725 Canola cytosol 89.2 85.97
TraesCS3A01G200100.1 Wheat cytosol 87.32 85.32
CDX70383 Canola cytosol 89.2 85.01
GSMUA_Achr8P05380_001 Banana cytosol 91.78 84.45
Bra008984.1-P Field mustard cytosol 83.57 83.57
Solyc08g061000.2.1 Tomato nucleus 92.72 81.44
AT5G11200.2 Thale cress cytosol 90.61 79.42
HORVU1Hr1G095100.5 Barley cytosol 86.85 78.89
CDY71952 Canola cytosol 75.82 77.46
Zm00001d009761_P004 Maize cytosol 88.5 77.1
CDX85726 Canola cytosol 88.03 76.53
CDX78412 Canola cytosol 89.2 76.46
CDX69778 Canola cytosol 88.73 76.36
Bra008983.1-P Field mustard cytosol 83.8 75.64
CDY51111 Canola cytosol 42.72 73.09
CDX69777 Canola cytosol, nucleus, plasma membrane 88.73 72.28
GSMUA_Achr3P26010_001 Banana endoplasmic reticulum 82.63 70.68
Bra006091.1-P Field mustard cytosol 81.92 66.6
Zm00001d011149_P002 Maize cytosol 24.88 63.86
Zm00001d011150_P005 Maize cytosol 67.61 62.2
CDY56825 Canola cytosol 29.81 55.7
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 30.75 43.81
KRH52210 Soybean cytosol, endoplasmic reticulum 35.21 36.32
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 34.98 36.08
KRH23270 Soybean cytosol 34.74 35.84
KRH10048 Soybean cytosol, endoplasmic reticulum 34.74 35.84
KRH12430 Soybean cytosol 34.74 35.84
KRH37426 Soybean cytosol, endoplasmic reticulum 34.74 35.84
KRH47074 Soybean nucleus 34.74 35.84
KRH44102 Soybean nucleus 35.21 35.63
KRH19215 Soybean cytosol, endoplasmic reticulum, nucleus 34.51 35.59
KRH02682 Soybean cytosol, endoplasmic reticulum, nucleus 34.27 35.35
KRH12197 Soybean nucleus 31.69 33.25
KRH37217 Soybean endoplasmic reticulum 31.46 32.92
KRH04755 Soybean cytosol 20.19 32.45
KRH48173 Soybean mitochondrion 34.51 29.4
KRH65096 Soybean nucleus 34.27 29.26
KRH48170 Soybean endoplasmic reticulum 34.27 29.03
KRH65098 Soybean endoplasmic reticulum, nucleus 34.04 28.88
KRG99590 Soybean endoplasmic reticulum, nucleus 30.99 27.05
KRH40488 Soybean cytosol 33.8 26.72
KRG93607 Soybean nucleus 30.28 26.06
KRH02098 Soybean cytosol 11.5 21.3
KRH43643 Soybean nucleus 26.06 19.75
KRH13813 Soybean nucleus 26.06 19.75
KRH51049 Soybean plastid 21.6 19.49
Protein Annotations
EntrezGene:100799082MapMan:16.11.1.3MapMan:16.4.7.1.1Gene3D:3.40.50.300UniProt:A0A0R0J4W7EMBL:ACUP02004151
InterPro:DEAD/DEAH_box_helicase_domEnsemblPlantsGene:GLYMA_07G031400GO:GO:0000166GO:GO:0000398GO:GO:0003674GO:GO:0003676
GO:GO:0003824GO:GO:0004004GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0005730GO:GO:0005737GO:GO:0006139
GO:GO:0006406GO:GO:0006810GO:GO:0006950GO:GO:0006974GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0010468GO:GO:0010501GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KRH47464ProteinID:KRH47464ProteinID:KRH47464.1
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFscan:PS51192PFscan:PS51194PFscan:PS51195
PANTHER:PTHR24031PANTHER:PTHR24031:SF530InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540
UniParc:UPI0000E64939SEG:seg::::
Description
hypothetical protein
Coordinates
chr7:+:2486974..2492620
Molecular Weight (calculated)
48181.2 Da
IEP (calculated)
5.498
GRAVY (calculated)
-0.254
Length
426 amino acids
Sequence
(BLAST)
001: MGELKDTEAY EEELIDYEEE EEKAPDSAKP VAESGKKGYV GIHSSGFRDF LLKPELLRAI VDSGFEHPSE VQHECIPQAI LGMDVICQAK SGMGKTAVFV
101: LSTLQQVDPV PGQVAALVLC HTRELAYQIC HEFERFSTYL PDIKAAVFYG GVNIKVHKEL LKNECPHIVV GTPGRILALA RDKDLGLKNV RHFILDECDK
201: MLESLDMRRD VQEIFKLTPH DKQVMMFSAT LSKEIRPVCK KFMQDPMEIY VDDEAKLTLH GLVQHYIKLQ ETEKNRKLND LLDALDFNQV VIFVKSVSRA
301: AELNKLLVEC NFPSICIHSA MSQEERLKRY KGFKEGKQRI LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VSSTADSEVL
401: NQVQSRFEVD IKELPEQIDT STYMPN
Best Arabidopsis Sequence Match ( AT5G11170.2 )
(BLAST)
001: MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALVLCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NIKIHKDLLK NECPHIVVGT PGRVLALARE
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS
Arabidopsis Description
RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.