Factsheet for TraesCS1D01G451300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G477500.1	Wheat	cytosol	99.05	97.22
TraesCS1A01G443400.1	Wheat	cytosol	99.05	96.54
KXG22711	Sorghum	cytosol	94.33	93.01
VIT_09s0002g06660.t01	Wine grape	cytosol	90.78	89.72
PGSC0003DMT400053566	Potato	cytosol	90.07	89.23
TraesCS3D01G204400.1	Wheat	cytosol	89.6	88.55
PGSC0003DMT400052757	Potato	cytosol	88.65	87.62
AT5G11170.1	Thale cress	cytosol	88.18	87.35
Solyc06g066060.2.1	Tomato	nucleus	84.16	86.83
KRH61783	Soybean	cytosol	87.47	86.65
KRH52452	Soybean	nucleus	87.23	86.42
KRH47464	Soybean	nucleus	86.52	85.92
Bra023311.1-P	Field mustard	cytosol	86.52	85.71
KRH44441	Soybean	cytosol, nucleus	86.29	85.68
HORVU1Hr1G095100.5	Barley	cytosol	94.8	85.5
Bra023312.1-P	Field mustard	cytosol	86.05	83.49
CDX85725	Canola	cytosol	86.76	83.03
CDY51112	Canola	cytosol	86.05	82.73
VIT_04s0008g05330.t01	Wine grape	cytosol	89.36	82.71
CDX70383	Canola	cytosol	87.23	82.55
GSMUA_Achr8P05380_001	Banana	cytosol	90.31	82.51
Zm00001d009761_P004	Maize	cytosol	93.38	80.78
Bra008984.1-P	Field mustard	cytosol	81.32	80.75
Solyc08g061000.2.1	Tomato	nucleus	90.07	78.56
CDY71952	Canola	cytosol	76.36	77.46
AT5G11200.2	Thale cress	cytosol	88.18	76.75
CDX69778	Canola	cytosol	87.23	74.55
CDX85726	Canola	cytosol	86.29	74.49
CDX78412	Canola	cytosol	87.47	74.45
CDY51111	Canola	cytosol	43.74	74.3
Bra008983.1-P	Field mustard	cytosol	82.27	73.73
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	83.22	70.68
CDX69777	Canola	cytosol, nucleus, plasma membrane	87.23	70.55
Bra006091.1-P	Field mustard	cytosol	80.38	64.89
CDY56825	Canola	cytosol	30.5	56.58
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	31.21	44.15
TraesCS7D01G412200.1	Wheat	golgi, nucleus	34.28	35.02
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	34.52	33.03
TraesCS2D01G554300.1	Wheat	nucleus	28.84	31.44
TraesCS6D01G401900.1	Wheat	nucleus	30.5	31.23
TraesCS2D01G553400.1	Wheat	cytosol	29.31	30.62
TraesCS2D01G366700.1	Wheat	cytosol	33.33	27.76
TraesCS6D01G219400.1	Wheat	cytosol	33.1	26.77
TraesCS1D01G164500.1	Wheat	cytosol	32.62	26.24
TraesCS5D01G532700.1	Wheat	cytosol	27.19	24.11
TraesCS4D01G272900.1	Wheat	cytosol	28.13	23.43
TraesCS3D01G530600.1	Wheat	plastid	20.8	19.6
TraesCS6D01G216300.1	Wheat	mitochondrion	22.7	17.84
TraesCS6D01G173700.3	Wheat	cytosol	29.55	9.3

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS1D01G451300	EnsemblPlants:TraesCS1D01G451300.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:493603142..493607834

Molecular Weight (calculated)

47783.6 Da

IEP (calculated)

5.777

GRAVY (calculated)

-0.262

Length

423 amino acids

Sequence
(BLAST)

001: MMGEAKENDV YEEELLDYEE DDDKALDASS TANAKPAADA AQAKKGYVGI HSSGFRDFLL KPELLRSVQH ECIPQAILGM DVICQAKSGM GKTAVFVLSS
101: LQQIDPTAGQ VAALVLCHTR ELAYQICNEF ERFSKFLPEL KVAVFYGGVH IKKHQDLLKN DCPHIVVGTP GRILALARDK DLSLKNVRHF ILDECDKMLE
201: SLDMRRDVQE IFKMTPHDKQ VMMFSATLSK EIRPICKKFM QDPMEIYVDD EAKLTLHGLV QHYIKLTESE KNRKLNDLLD ALDFNQVVIF VKSVSRAAEL
301: NKLLCECNFP SICIHSGMTQ EERLTRYKNF KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVSS ASDSDVLNQV
401: QERFEVDIKE LPEQIDTSTY MPS

Best Arabidopsis Sequence Match ( AT5G11170.2 )
(BLAST)

001: MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALVLCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NIKIHKDLLK NECPHIVVGT PGRVLALARE
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS

Arabidopsis Description

RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.