Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47464 | Soybean | nucleus | 99.77 | 99.77 |
| PGSC0003DMT400053566 | Potato | cytosol | 92.96 | 92.74 |
| KRH52452 | Soybean | nucleus | 92.25 | 92.04 |
| KRH61783 | Soybean | cytosol | 92.02 | 91.8 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 91.78 | 91.36 |
| PGSC0003DMT400052757 | Potato | cytosol | 91.55 | 91.12 |
| Solyc06g066060.2.1 | Tomato | nucleus | 87.32 | 90.73 |
| AT5G11170.1 | Thale cress | cytosol | 90.61 | 90.4 |
| KXG22711 | Sorghum | cytosol | 89.2 | 88.58 |
| KXG32708 | Sorghum | cytosol | 88.97 | 88.55 |
| Bra023311.1-P | Field mustard | cytosol | 88.26 | 88.06 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 87.79 | 87.38 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 87.56 | 87.15 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 88.03 | 87.01 |
| Bra023312.1-P | Field mustard | cytosol | 88.5 | 86.47 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 88.03 | 86.41 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 87.56 | 86.34 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 85.68 | 86.29 |
| CDY51112 | Canola | cytosol | 88.97 | 86.14 |
| Os01t0549700-01 | Rice | cytosol, plastid | 87.32 | 86.11 |
| CDX85725 | Canola | cytosol | 89.2 | 85.97 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 87.32 | 85.32 |
| CDX70383 | Canola | cytosol | 89.2 | 85.01 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 91.78 | 84.45 |
| Bra008984.1-P | Field mustard | cytosol | 83.57 | 83.57 |
| Solyc08g061000.2.1 | Tomato | nucleus | 92.72 | 81.44 |
| AT5G11200.2 | Thale cress | cytosol | 90.61 | 79.42 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 86.62 | 78.68 |
| CDY71952 | Canola | cytosol | 75.82 | 77.46 |
| Zm00001d009761_P004 | Maize | cytosol | 88.5 | 77.1 |
| CDX85726 | Canola | cytosol | 88.03 | 76.53 |
| CDX78412 | Canola | cytosol | 89.2 | 76.46 |
| CDX69778 | Canola | cytosol | 88.73 | 76.36 |
| Bra008983.1-P | Field mustard | cytosol | 83.8 | 75.64 |
| CDY51111 | Canola | cytosol | 42.72 | 73.09 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 88.73 | 72.28 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 82.63 | 70.68 |
| Bra006091.1-P | Field mustard | cytosol | 81.92 | 66.6 |
| Zm00001d011149_P002 | Maize | cytosol | 24.88 | 63.86 |
| Zm00001d011150_P005 | Maize | cytosol | 67.61 | 62.2 |
| CDY56825 | Canola | cytosol | 29.81 | 55.7 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.75 | 43.81 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 35.21 | 36.32 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 34.98 | 36.08 |
| KRH23270 | Soybean | cytosol | 34.74 | 35.84 |
| KRH10048 | Soybean | cytosol, endoplasmic reticulum | 34.74 | 35.84 |
| KRH12430 | Soybean | cytosol | 34.74 | 35.84 |
| KRH37426 | Soybean | cytosol, endoplasmic reticulum | 34.74 | 35.84 |
| KRH47074 | Soybean | nucleus | 34.74 | 35.84 |
| KRH44102 | Soybean | nucleus | 35.21 | 35.63 |
| KRH19215 | Soybean | cytosol, endoplasmic reticulum, nucleus | 34.51 | 35.59 |
| KRH02682 | Soybean | cytosol, endoplasmic reticulum, nucleus | 34.27 | 35.35 |
| KRH12197 | Soybean | nucleus | 31.69 | 33.25 |
| KRH37217 | Soybean | endoplasmic reticulum | 31.46 | 32.92 |
| KRH04755 | Soybean | cytosol | 20.19 | 32.45 |
| KRH48173 | Soybean | mitochondrion | 34.51 | 29.4 |
| KRH65096 | Soybean | nucleus | 34.27 | 29.26 |
| KRH48170 | Soybean | endoplasmic reticulum | 34.27 | 29.03 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 34.04 | 28.88 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 30.99 | 27.05 |
| KRH40488 | Soybean | cytosol | 33.8 | 26.72 |
| KRG93607 | Soybean | nucleus | 30.28 | 26.06 |
| KRH02098 | Soybean | cytosol | 11.5 | 21.3 |
| KRH43643 | Soybean | nucleus | 26.06 | 19.75 |
| KRH13813 | Soybean | nucleus | 26.06 | 19.75 |
| KRH51049 | Soybean | plastid | 21.36 | 19.28 |
Protein Annotations
| EntrezGene:100785358 | MapMan:16.11.1.3 | MapMan:16.4.7.1.1 | Gene3D:3.40.50.300 | EMBL:ACUP02004928 | InterPro:DEAD/DEAH_box_helicase_dom |
| EnsemblPlantsGene:GLYMA_08G211400 | GO:GO:0000166 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006406 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | UniProt:I1KVD4 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KRH44441 | ProteinID:KRH44441 | ProteinID:KRH44441.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0002338F78 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:17064143..17069378
Molecular Weight (calculated)
48211.2 Da
IEP (calculated)
5.498
GRAVY (calculated)
-0.260
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MGELKDTEAY EEELIDYEEE EEKAPDSAKP VTESGKKGYV GIHSSGFRDF LLKPELLRAI VDSGFEHPSE VQHECIPQAI LGMDVICQAK SGMGKTAVFV
101: LSTLQQVDPV PGQVAALVLC HTRELAYQIC HEFERFSTYL PDIKAAVFYG GVNIKVHKEL LKNECPHIVV GTPGRILALA RDKDLGLKNV RHFILDECDK
201: MLESLDMRRD VQEIFKLTPH DKQVMMFSAT LSKEIRPVCK KFMQDPMEIY VDDEAKLTLH GLVQHYIKLQ ETEKNRKLND LLDALDFNQV VIFVKSVSRA
301: AELNKLLVEC NFPSICIHSA MSQEERLKRY KGFKEGKQRI LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VSSTADSEVL
401: NQVQSRFEVD IKELPEQIDT STYMPN
101: LSTLQQVDPV PGQVAALVLC HTRELAYQIC HEFERFSTYL PDIKAAVFYG GVNIKVHKEL LKNECPHIVV GTPGRILALA RDKDLGLKNV RHFILDECDK
201: MLESLDMRRD VQEIFKLTPH DKQVMMFSAT LSKEIRPVCK KFMQDPMEIY VDDEAKLTLH GLVQHYIKLQ ETEKNRKLND LLDALDFNQV VIFVKSVSRA
301: AELNKLLVEC NFPSICIHSA MSQEERLKRY KGFKEGKQRI LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VSSTADSEVL
401: NQVQSRFEVD IKELPEQIDT STYMPN
001: MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALVLCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NIKIHKDLLK NECPHIVVGT PGRVLALARE
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS
Arabidopsis Description
RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.