Factsheet for Bra023312.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023311.1-P	Field mustard	cytosol	94.04	96.02
AT5G11170.1	Thale cress	cytosol	93.58	95.55
CDX85725	Canola	cytosol	96.79	95.48
CDY51112	Canola	cytosol	96.1	95.23
Bra008984.1-P	Field mustard	cytosol	89.91	92.02
PGSC0003DMT400053566	Potato	cytosol	89.68	91.57
PGSC0003DMT400052757	Potato	cytosol	89.68	91.36
VIT_09s0002g06660.t01	Wine grape	cytosol	88.53	90.19
Solyc06g066060.2.1	Tomato	nucleus	84.4	89.76
KRH44441	Soybean	cytosol, nucleus	86.47	88.5
KRH47464	Soybean	nucleus	86.47	88.5
KXG22711	Sorghum	cytosol	85.78	87.18
KXG32708	Sorghum	cytosol	85.55	87.15
TraesCS3B01G224400.1	Wheat	cytosol	85.55	87.15
TraesCS3D01G204400.1	Wheat	cytosol	85.32	86.92
TraesCS1B01G477500.1	Wheat	cytosol	85.78	86.77
TraesCS1A01G443400.1	Wheat	cytosol	85.78	86.18
TraesCS1D01G451300.1	Wheat	cytosol	83.49	86.05
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	84.63	85.42
Os01t0549700-01	Rice	cytosol, plastid	84.63	85.42
VIT_04s0008g05330.t01	Wine grape	cytosol	88.99	84.9
TraesCS3A01G200100.1	Wheat	cytosol	84.86	84.86
GSMUA_Achr8P05380_001	Banana	cytosol	89.45	84.23
AT5G11200.2	Thale cress	cytosol	93.58	83.95
Bra008983.1-P	Field mustard	cytosol	90.37	83.47
Solyc08g061000.2.1	Tomato	nucleus	89.45	80.41
HORVU1Hr1G095100.5	Barley	cytosol	84.4	78.46
Zm00001d009761_P004	Maize	cytosol	85.32	76.07
Bra006091.1-P	Field mustard	cytosol	88.76	73.86
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	79.59	69.68
Zm00001d011149_P002	Maize	cytosol	24.77	65.06
Zm00001d011150_P005	Maize	cytosol	64.68	60.91
Bra030892.1-P	Field mustard	cytosol	6.88	44.12
Bra037977.1-P	Field mustard	cytosol	33.72	35.68
Bra021517.1-P	Field mustard	cytosol	33.49	35.44
Bra027387.1-P	Field mustard	cytosol	33.49	35.44
Bra030893.1-P	Field mustard	cytosol	33.49	35.44
Bra029124.1-P	Field mustard	cytosol	33.26	35.37
Bra001530.1-P	Field mustard	cytosol	33.72	35.34
Bra014365.1-P	Field mustard	cytosol	33.26	35.19
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.26	33.96
Bra008527.1-P	Field mustard	cytosol	25.23	33.33
Bra032127.1-P	Field mustard	cytosol	30.96	33.09
Bra022449.1-P	Field mustard	cytosol	30.73	32.84
Bra038231.1-P	Field mustard	cytosol	30.73	32.84
Bra014267.1-P	Field mustard	cytosol	29.36	31.68
Bra003442.1-P	Field mustard	cytosol	32.57	29.77
Bra007587.1-P	Field mustard	cytosol	32.11	29.6
Bra037351.1-P	Field mustard	cytosol	33.03	28.24
Bra000965.1-P	Field mustard	cytosol	32.57	27.68
Bra039312.1-P	Field mustard	cytosol	32.57	27.47
Bra040687.1-P	Field mustard	cytosol	30.5	26.81
Bra028547.1-P	Field mustard	cytosol	30.05	26.68
Bra016037.1-P	Field mustard	cytosol	32.8	19.67
Bra023712.1-P	Field mustard	plastid	20.87	19.04

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra023312	EnsemblPlants:Bra023312.1	EnsemblPlants:Bra023312.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4E3G0
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002543336	SEG:seg	:	:	:	:

Description

AT5G11200 (E=1e-198) | DEAD/DEAH box helicase, putative

Coordinates

chrA02:+:2785628..2788641

Molecular Weight (calculated)

49365.4 Da

IEP (calculated)

5.603

GRAVY (calculated)

-0.297

Length

436 amino acids

Sequence
(BLAST)

001: MEDPRDNEAY EEELLDYEEE DEKAPDSANK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKFTFHSLP LQHECIPQAI LGMDVICQAK
101: SGMGKTAVFV LSTLQQIEPT PGQVSALILC HTRELAYQIC NEFVRFSTYL PDTKVSVFYG GVNNKIHKAL LKNECPHIVV GTPGRVLGLS RDKDLSLNNV
201: RHFILDECDK MLESLDMRRD VQEIFKMTPH DKQVMMFSAT LSKEIRPVCK KFMQDPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNKV
301: VIFVKSVSRA GELNKLLIEC NFPSICIHSG MSQEERLTHY KSFKEGHKRI LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF
401: VASASDSEVL NQVQDRFEVD IKELPEQIDT STYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.