Factsheet for AT5G11170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023311.1-P	Field mustard	cytosol	96.02	96.02
PGSC0003DMT400052757	Potato	cytosol	94.38	94.16
PGSC0003DMT400053566	Potato	cytosol	93.68	93.68
Bra023312.1-P	Field mustard	cytosol	95.55	93.58
VIT_09s0002g06660.t01	Wine grape	cytosol	93.21	92.99
CDX85725	Canola	cytosol	96.25	92.99
CDX70383	Canola	cytosol	96.96	92.62
CDY51112	Canola	cytosol	95.32	92.5
Solyc06g066060.2.1	Tomato	nucleus	88.06	91.71
KRH44441	Soybean	cytosol, nucleus	90.4	90.61
KRH47464	Soybean	nucleus	90.4	90.61
Bra008984.1-P	Field mustard	cytosol	90.16	90.38
KXG22711	Sorghum	cytosol	90.63	90.21
KXG32708	Sorghum	cytosol	89.93	89.72
TraesCS3B01G224400.1	Wheat	cytosol	89.23	89.02
TraesCS1B01G477500.1	Wheat	cytosol	89.7	88.86
TraesCS3D01G204400.1	Wheat	cytosol	88.99	88.78
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	89.7	88.66
Os01t0549700-01	Rice	cytosol, plastid	89.46	88.43
TraesCS1A01G443400.1	Wheat	cytosol	89.7	88.25
TraesCS1D01G451300.1	Wheat	cytosol	87.35	88.18
AT5G11200.2	Thale cress	cytosol	100.0	87.86
VIT_04s0008g05330.t01	Wine grape	cytosol	93.68	87.53
TraesCS3A01G200100.1	Wheat	cytosol	88.52	86.7
GSMUA_Achr8P05380_001	Banana	cytosol	93.21	85.96
Bra008983.1-P	Field mustard	cytosol	92.51	83.69
CDX85726	Canola	cytosol	96.02	83.67
CDX78412	Canola	cytosol	97.19	83.5
CDX69778	Canola	cytosol	96.25	83.03
CDY71952	Canola	cytosol	80.8	82.73
Solyc08g061000.2.1	Tomato	nucleus	93.68	82.47
CDY51111	Canola	cytosol	47.31	81.12
HORVU1Hr1G095100.5	Barley	cytosol	88.29	80.38
CDX69777	Canola	cytosol, nucleus, plasma membrane	97.42	79.54
Zm00001d009761_P004	Maize	cytosol	89.7	78.32
Bra006091.1-P	Field mustard	cytosol	89.46	72.9
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	83.37	71.49
Zm00001d011149_P002	Maize	cytosol	26.23	67.47
Zm00001d011150_P005	Maize	cytosol	67.21	61.99
CDY56825	Canola	cytosol	31.85	59.65
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	31.15	44.48
AT1G72730.1	Thale cress	cytosol	34.43	35.51
AT1G54270.1	Thale cress	cytosol	34.19	35.44
AT3G13920.5	Thale cress	cytosol	33.96	34.61
AT1G51380.1	Thale cress	cytosol	30.91	33.67
AT3G19760.1	Thale cress	cytosol	31.38	32.84
AT3G61240.1	Thale cress	cytosol	33.26	28.51
AT4G00660.1	Thale cress	cytosol, mitochondrion	33.26	28.12
AT2G45810.1	Thale cress	cytosol, plastid	34.19	27.65
AT3G53110.1	Thale cress	cytosol	30.68	26.41
AT1G12770.2	Thale cress	mitochondrion, plastid	25.06	19.42
AT5G19210.2	Thale cress	plastid	21.31	19.28

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	EntrezGene:830986	EntrezGene:830990	UniProt:A0A178UKF1
ProteinID:AED91642.1	ProteinID:AED91645.1	EMBL:AF378868	EMBL:AJ010466	EMBL:AK221273	EMBL:AK221708
EMBL:AK226428	EMBL:AK319088	ArrayExpress:AT5G11170	EnsemblPlantsGene:AT5G11170	RefSeq:AT5G11170	TAIR:AT5G11170
RefSeq:AT5G11170-TAIR-G	EnsemblPlants:AT5G11170.1	TAIR:AT5G11170.1	EMBL:AY052303	EMBL:AY059168	EMBL:BT001052
ProteinID:CAB96652.1	ProteinID:CAB96655.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003723	GO:GO:0003725
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006406	GO:GO:0006810	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009506	GO:GO:0009987
GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0016887	GO:GO:0046686	GO:GO:0051028
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_568244.2
RefSeq:NP_568245.1	ProteinID:OAO94229.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PO:PO:0000005
PO:PO:0000293	PO:PO:0009005	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF530	UniProt:Q56XG6	UniProt:Q9LFN6	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00000AC46C	SEG:seg	:	:	:

Description

RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]

Coordinates

chr5:+:3553096..3557018

Molecular Weight (calculated)

48340.2 Da

IEP (calculated)

5.368

GRAVY (calculated)

-0.266

Length

427 amino acids

Sequence
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.