Factsheet for AT2G45810.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039312.1-P	Field mustard	cytosol	90.91	92.84
CDY27357	Canola	cytosol, plastid	89.39	92.73
CDY37067	Canola	cytosol	89.39	92.55
KRH04755	Soybean	cytosol	44.89	89.43
AT3G61240.1	Thale cress	cytosol	82.01	86.95
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	74.62	82.08
VIT_15s0046g03200.t01	Wine grape	cytosol	75.19	80.86
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	75.19	80.69
AT4G00660.1	Thale cress	cytosol, mitochondrion	76.89	80.4
Solyc10g017530.2.1	Tomato	nucleus	74.62	80.24
KRH48170	Soybean	endoplasmic reticulum	76.14	79.92
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	51.33	79.71
KRH48173	Soybean	mitochondrion	75.38	79.6
KRH65096	Soybean	nucleus	75.19	79.56
GSMUA_Achr5P12220_001	Banana	cytosol	74.05	79.47
GSMUA_Achr2P10560_001	Banana	cytosol	72.92	79.22
Solyc01g094350.2.1	Tomato	nucleus	74.62	79.12
KRH65098	Soybean	endoplasmic reticulum, nucleus	75.19	79.08
Os04t0533000-02	Rice	cytosol	73.3	77.71
Os02t0641800-02	Rice	plasma membrane, plastid	74.05	76.97
TraesCS2B01G387200.1	Wheat	cytosol	72.35	76.55
TraesCS2A01G370200.2	Wheat	cytosol	72.16	76.05
HORVU6Hr1G060630.1	Barley	cytosol	74.43	75.87
TraesCS2D01G366700.1	Wheat	cytosol	72.54	75.39
TraesCS6A01G236800.1	Wheat	cytosol	74.24	74.95
Zm00001d051268_P004	Maize	extracellular	73.86	74.71
TraesCS6D01G219400.1	Wheat	cytosol	73.67	74.38
TraesCS6B01G265300.1	Wheat	cytosol	73.67	74.38
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	70.83	74.35
EER91410	Sorghum	cytosol	71.02	73.96
EER91411	Sorghum	cytosol	70.83	73.77
Zm00001d017384_P008	Maize	cytosol	73.3	73.71
Os10t0503700-01	Rice	plasma membrane	72.73	73.7
KRH40488	Soybean	cytosol	74.05	72.54
TraesCS1A01G174600.1	Wheat	cytosol	71.4	71.81
TraesCS1B01G189900.1	Wheat	cytosol	71.4	71.81
TraesCS1D01G164500.1	Wheat	cytosol	71.21	71.48
GSMUA_Achr11P...	Banana	cytosol	74.43	69.56
HORVU1Hr1G046020.1	Barley	cytosol	71.4	66.84
Solyc05g048850.2.1	Tomato	mitochondrion	66.67	65.55
AT1G72730.1	Thale cress	cytosol	28.79	36.72
AT1G54270.1	Thale cress	cytosol	28.22	36.16
AT3G13920.5	Thale cress	cytosol	28.6	36.04
AT5G11170.1	Thale cress	cytosol	27.65	34.19
AT3G19760.1	Thale cress	cytosol	26.14	33.82
AT1G51380.1	Thale cress	cytosol	24.62	33.16
AT5G11200.2	Thale cress	cytosol	27.65	30.04
AT3G53110.1	Thale cress	cytosol	24.43	26.01
AT5G19210.2	Thale cress	plastid	19.51	21.82
AT1G12770.2	Thale cress	mitochondrion, plastid	21.21	20.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:819189	ProteinID:AAC28543.1	ProteinID:AEC10604.1	EMBL:AJ010459
ArrayExpress:AT2G45810	EnsemblPlantsGene:AT2G45810	RefSeq:AT2G45810	TAIR:AT2G45810	RefSeq:AT2G45810-TAIR-G	EnsemblPlants:AT2G45810.1
TAIR:AT2G45810.1	EMBL:AY039862	Unigene:At.46	EMBL:BT002709	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006397	GO:GO:0006412	GO:GO:0006417	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010494	GO:GO:0010501	GO:GO:0016043
GO:GO:0016787	GO:GO:0019538	GO:GO:0033962	GO:GO:0051028	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_182105.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF555	UniProt:Q94BV4	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000009D455	SEG:seg	:	:	:

Description

RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]

Coordinates

chr2:+:18859472..18862970

Molecular Weight (calculated)

60424.3 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.538

Length

528 amino acids

Sequence
(BLAST)

001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.