Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58940 | Canola | cytosol | 92.86 | 90.1 |
| Bra014267.1-P | Field mustard | cytosol | 92.86 | 90.1 |
| CDY03623 | Canola | cytosol | 92.35 | 89.6 |
| CDY22577 | Canola | cytosol | 30.61 | 80.54 |
| AT3G19760.1 | Thale cress | cytosol | 76.28 | 73.28 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 71.68 | 72.42 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 71.43 | 71.61 |
| KRH12197 | Soybean | nucleus | 72.96 | 70.44 |
| KRH37217 | Soybean | endoplasmic reticulum | 72.96 | 70.27 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 73.98 | 69.88 |
| Os01t0639100-01 | Rice | nucleus | 71.94 | 69.8 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 71.68 | 69.55 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 65.05 | 69.11 |
| EES07819 | Sorghum | cytosol | 71.43 | 68.8 |
| PGSC0003DMT400019783 | Potato | cytosol | 71.68 | 68.7 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 71.17 | 68.55 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 68.37 | 65.85 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 69.13 | 65.78 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 65.05 | 65.72 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 68.62 | 65.29 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 67.35 | 65.19 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 68.62 | 65.13 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 68.62 | 65.13 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 53.83 | 63.36 |
| Zm00001d018542_P006 | Maize | cytosol | 70.92 | 62.75 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 22.96 | 58.82 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 22.96 | 58.82 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 22.7 | 54.94 |
| AT1G72730.1 | Thale cress | cytosol | 56.89 | 53.86 |
| AT1G54270.1 | Thale cress | cytosol | 56.12 | 53.4 |
| AT3G13920.5 | Thale cress | cytosol | 55.36 | 51.79 |
| AT5G11170.1 | Thale cress | cytosol | 33.67 | 30.91 |
| AT5G11200.2 | Thale cress | cytosol | 33.67 | 27.16 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 34.69 | 26.93 |
| AT3G61240.1 | Thale cress | cytosol | 33.42 | 26.31 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 33.16 | 24.62 |
| AT3G53110.1 | Thale cress | cytosol | 30.87 | 24.4 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 26.79 | 19.06 |
| AT5G19210.2 | Thale cress | plastid | 22.19 | 18.43 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:841562 | ProteinID:AAD30651.1 | ProteinID:AAG52624.1 | ProteinID:AEE32660.1 |
| ArrayExpress:AT1G51380 | EnsemblPlantsGene:AT1G51380 | RefSeq:AT1G51380 | TAIR:AT1G51380 | RefSeq:AT1G51380-TAIR-G | EnsemblPlants:AT1G51380.1 |
| TAIR:AT1G51380.1 | EMBL:AY058890 | EMBL:AY079046 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0042254 | GO:GO:0071013 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_175549.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF57 | UniProt:Q9C8J1 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000009DF2F | : | : | : | : | : |
Description
RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
Coordinates
chr1:+:19047672..19050214
Molecular Weight (calculated)
44359.7 Da
IEP (calculated)
8.194
GRAVY (calculated)
-0.339
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.