Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH37217 Soybean endoplasmic reticulum 99.75 99.51
Solyc11g033280.1.1 Tomato cytosol, nucleus, plastid 87.68 91.05
VIT_06s0080g00550.t01 Wine grape cytosol 92.61 90.6
PGSC0003DMT400019783 Potato cytosol 90.39 89.73
GSMUA_Achr9P23810_001 Banana cytosol 85.47 89.43
Os01t0639100-01 Rice nucleus 87.19 87.62
TraesCS2A01G552800.1 Wheat cytosol 79.56 87.53
Os03t0566800-01 Rice cytosol, nucleus, plasma membrane 86.7 87.13
EES07819 Sorghum cytosol 86.95 86.73
Zm00001d051840_P003 Maize extracellular, mitochondrion 86.7 86.49
AT3G19760.1 Thale cress cytosol 86.21 85.78
CDY33416 Canola cytosol 85.96 85.54
CDY24617 Canola cytosol 85.96 85.54
Bra022449.1-P Field mustard cytosol 85.96 85.54
CDY42205 Canola cytosol 85.71 85.29
CDX82280 Canola cytosol 85.71 85.29
Bra038231.1-P Field mustard cytosol 85.71 85.29
Bra032127.1-P Field mustard cytosol 85.71 85.29
CDY51692 Canola cytosol 85.71 85.29
CDY22956 Canola cytosol 85.47 85.05
TraesCS2D01G554300.1 Wheat nucleus 79.56 83.25
TraesCS2B01G584200.1 Wheat mitochondrion 83.25 83.05
HORVU6Hr1G094560.1 Barley cytosol 83.99 82.77
TraesCS6D01G401900.1 Wheat nucleus 83.99 82.57
TraesCS6A01G416700.1 Wheat nucleus 83.74 82.32
TraesCS6B01G472700.1 Wheat nucleus 83.5 82.28
TraesCS2D01G553400.1 Wheat cytosol 81.53 81.73
GSMUA_Achr3P27120_001 Banana cytosol 66.26 80.78
Zm00001d018542_P006 Maize cytosol 86.45 79.23
AT1G51380.1 Thale cress cytosol 70.44 72.96
CDY58940 Canola cytosol 72.41 72.77
Bra014267.1-P Field mustard cytosol 72.41 72.77
CDY03623 Canola cytosol 72.17 72.52
HORVU3Hr1G015460.1 Barley cytosol 27.09 71.9
HORVU3Hr1G015500.1 Barley cytosol 27.09 71.9
HORVU3Hr1G050890.1 Barley cytosol 27.09 67.9
CDY22577 Canola cytosol 23.89 65.1
KRH37426 Soybean cytosol, endoplasmic reticulum 63.05 61.99
KRH12430 Soybean cytosol 63.05 61.99
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 63.05 61.99
KRH52210 Soybean cytosol, endoplasmic reticulum 62.56 61.5
KRH19215 Soybean cytosol, endoplasmic reticulum, nucleus 62.07 61.02
KRH02682 Soybean cytosol, endoplasmic reticulum, nucleus 62.07 61.02
KRH23270 Soybean cytosol 61.58 60.53
KRH10048 Soybean cytosol, endoplasmic reticulum 61.58 60.53
KRH47074 Soybean nucleus 61.33 60.29
KRH44102 Soybean nucleus 61.58 59.38
KRH04755 Soybean cytosol 21.67 33.21
KRH44441 Soybean cytosol, nucleus 33.25 31.69
KRH47464 Soybean nucleus 33.25 31.69
KRH61783 Soybean cytosol 33.0 31.38
KRH52452 Soybean nucleus 33.0 31.38
KRH48173 Soybean mitochondrion 35.47 28.8
KRH65098 Soybean endoplasmic reticulum, nucleus 35.47 28.69
KRH65096 Soybean nucleus 35.22 28.66
KRH48170 Soybean endoplasmic reticulum 35.47 28.63
KRG99590 Soybean endoplasmic reticulum, nucleus 33.99 28.28
KRG93607 Soybean nucleus 34.24 28.08
KRH40488 Soybean cytosol 35.22 26.53
KRH02098 Soybean cytosol 12.07 21.3
KRH13813 Soybean nucleus 28.08 20.28
KRH43643 Soybean nucleus 28.08 20.28
KRH51049 Soybean plastid 23.15 19.92
Protein Annotations
EntrezGene:100795032MapMan:17.3.1.1.1Gene3D:3.40.50.300UniProt:A0A0R0GBB6EMBL:ACUP02009275InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_15G158800GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KRH12197
ProteinID:KRH12197ProteinID:KRH12197.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFscan:PS51192
PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF57InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487
SMART:SM00490SUPFAM:SSF52540UniParc:UPI0001B63AF3SEG:seg::
Description
hypothetical protein
Coordinates
chr15:-:13371775..13376269
Molecular Weight (calculated)
45974.7 Da
IEP (calculated)
6.100
GRAVY (calculated)
-0.201
Length
406 amino acids
Sequence
(BLAST)
001: MATTSVVPAN RRRAANPAEE MDFETTEGVK AIASFEEMGI KDDLLRGIYQ YGFEKPSAIQ QRAVTPIIQG RDVIAQAQSG TGKTSMIALT VCQVVDTSVR
101: EVQALILSPT RELASQTEKV ILAIGDFINI QAHACVGGKS VGEDIRKLEY GVHVVSGTPG RVCDMIKRRT LRTRAIKMLV LDESDEMLSR GFKDQIYDVY
201: RYLPPDLQVC LISATLPHEI LEMTNKFMTD PVRILVKRDE LTLEGIKQFF VAVEREEWKF DTLCDLYDTL TITQAVIFCN TKRKVDWLTE KMRNNNFTVS
301: SMHGDMPQKE RDAIMGEFRA GTTRVLITTD VWARGLDVQQ VSLVINYDLP NNRELYIHRI GRSGRFGRKG VAINFVKSDD IKILRDIEQY YSTQIDEMPM
401: NVADLI
Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)
001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
Arabidopsis Description
EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.