Factsheet for TraesCS2D01G554300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G552800.1	Wheat	cytosol	90.46	95.12
TraesCS2D01G553400.1	Wheat	cytosol	95.1	91.11
TraesCS6D01G401900.1	Wheat	nucleus	95.88	90.07
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	89.69	86.14
Os01t0639100-01	Rice	nucleus	89.18	85.64
Zm00001d051840_P003	Maize	extracellular, mitochondrion	88.92	84.77
EES07819	Sorghum	cytosol	88.92	84.77
GSMUA_Achr9P23810_001	Banana	cytosol	84.54	84.54
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	83.76	83.12
PGSC0003DMT400019783	Potato	cytosol	85.57	81.17
VIT_06s0080g00550.t01	Wine grape	cytosol	85.82	80.24
KRH12197	Soybean	nucleus	83.25	79.56
KRH37217	Soybean	endoplasmic reticulum	83.25	79.36
AT3G19760.1	Thale cress	cytosol	82.22	78.19
Bra022449.1-P	Field mustard	cytosol	81.96	77.94
CDY33416	Canola	cytosol	81.96	77.94
CDY24617	Canola	cytosol	81.96	77.94
Zm00001d018542_P006	Maize	cytosol	88.92	77.88
CDY51692	Canola	cytosol	81.7	77.7
CDY42205	Canola	cytosol	81.7	77.7
Bra038231.1-P	Field mustard	cytosol	81.7	77.7
Bra032127.1-P	Field mustard	cytosol	81.7	77.7
CDY22956	Canola	cytosol	81.7	77.7
CDX82280	Canola	cytosol	81.44	77.45
GSMUA_Achr3P27120_001	Banana	cytosol	62.89	73.27
CDY22577	Canola	cytosol	25.0	65.1
AT1G51380.1	Thale cress	cytosol	65.72	65.05
Bra014267.1-P	Field mustard	cytosol	67.53	64.85
CDY58940	Canola	cytosol	67.53	64.85
CDY03623	Canola	cytosol	67.53	64.85
TraesCS7D01G412200.1	Wheat	golgi, nucleus	63.92	59.9
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	64.18	56.33
TraesCS3D01G204400.1	Wheat	cytosol	33.25	30.14
TraesCS1D01G451300.1	Wheat	cytosol	31.44	28.84
TraesCS2D01G366700.1	Wheat	cytosol	35.57	27.17
TraesCS6D01G219400.1	Wheat	cytosol	35.05	26.0
TraesCS1D01G164500.1	Wheat	cytosol	34.54	25.48
TraesCS4D01G272900.1	Wheat	cytosol	33.25	25.39
TraesCS5D01G532700.1	Wheat	cytosol	30.93	25.16
TraesCS3D01G530600.1	Wheat	plastid	21.91	18.93
TraesCS6D01G216300.1	Wheat	mitochondrion	23.2	16.73
TraesCS6D01G173700.3	Wheat	cytosol	44.33	12.8

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2D01G554300	EnsemblPlants:TraesCS2D01G554300.1	TIGR:cd00079
TIGR:cd00268	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:628596452..628601033

Molecular Weight (calculated)

43781.0 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.210

Length

388 amino acids

Sequence
(BLAST)

001: MAAAGSSRRG PMDDDKLNFE TSAGVDVVGS FDAMGIREDL LRGIYGYGFE KPSAIQQRAV VPIIAGRDVI AQAQSGTGKT SMVSLSVCQV IDTNIHEVQA
101: LILSPTRELA TQTERVMQAV GNYMSVSVHA CVGGKSIGED IRKLEAGVHV VSGTPGRVCD MIKRRTLRTR AIKLLVLDEA DEMLTRGFKD QIYDVYRYLP
201: PELQITSKFM TDPVRILVKR DELTLEGMKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDWL TERMRTNNFT VSAMHGDMPQ KERDAIMSEF
301: RSGTTRVLIT TDVWARGLDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVRK DDIRILRDIE QYYSTQIDEM PMNVADLI

Best Arabidopsis Sequence Match ( AT1G51380.1 )
(BLAST)

001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV

Arabidopsis Description

RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.