Factsheet for HORVU6Hr1G060630.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G000880.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	HORVU3Hr1G000880.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G236800.1	Wheat	cytosol	98.46	97.51
TraesCS6B01G265300.1	Wheat	cytosol	97.3	96.37
TraesCS6D01G219400.1	Wheat	cytosol	96.91	95.98
KRH04755	Soybean	cytosol	47.1	92.08
Zm00001d051268_P004	Maize	extracellular	89.96	89.27
CDY54061	Canola	cytosol	55.98	88.96
CDY45702	Canola	cytosol	34.94	87.86
Zm00001d017384_P008	Maize	cytosol	89.0	87.81
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	80.31	86.67
Solyc10g017530.2.1	Tomato	nucleus	80.89	85.34
Bra008527.1-P	Field mustard	cytosol	54.25	85.15
KRH48170	Soybean	endoplasmic reticulum	81.27	83.7
KRH48173	Soybean	mitochondrion	80.69	83.6
KRH65098	Soybean	endoplasmic reticulum, nucleus	80.89	83.47
KRH65096	Soybean	nucleus	80.12	83.17
Solyc01g094350.2.1	Tomato	nucleus	79.54	82.73
AT4G00660.1	Thale cress	cytosol, mitochondrion	80.12	82.18
CDY51147	Canola	cytosol	77.99	81.45
CDY07205	Canola	cytosol	76.83	81.06
CDX91901	Canola	cytosol	77.99	80.64
Bra037351.1-P	Field mustard	cytosol	79.34	80.59
CDX74342	Canola	cytosol	78.96	79.57
Bra000965.1-P	Field mustard	cytosol	78.57	79.34
Bra007587.1-P	Field mustard	cytosol	71.43	78.22
Bra003442.1-P	Field mustard	cytosol	72.01	78.2
CDY58787	Canola	cytosol	72.59	78.01
AT3G61240.1	Thale cress	cytosol	74.71	77.71
CDY48935	Canola	cytosol, plastid	70.85	77.26
CDX71756	Canola	cytosol	71.43	77.24
CDY37067	Canola	cytosol	75.1	76.27
CDY27357	Canola	cytosol, plastid	74.13	75.44
Bra039312.1-P	Field mustard	cytosol	75.1	75.24
GSMUA_Achr11P...	Banana	cytosol	81.47	74.69
AT2G45810.1	Thale cress	cytosol, plastid	75.87	74.43
HORVU1Hr1G046020.1	Barley	cytosol	79.73	73.23
Solyc05g048850.2.1	Tomato	mitochondrion	72.01	69.46
HORVU6Hr1G094560.1	Barley	cytosol	27.99	35.19
HORVU3Hr1G015500.1	Barley	cytosol	9.85	33.33
HORVU3Hr1G015460.1	Barley	cytosol	9.85	33.33
HORVU3Hr1G050890.1	Barley	cytosol	10.23	32.72
HORVU6Hr1G020910.1	Barley	cytosol	30.12	30.89
HORVU1Hr1G095100.5	Barley	cytosol	27.41	30.28
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	23.55	24.11
HORVU3Hr1G114220.3	Barley	plastid	19.69	20.61
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	24.32	19.69
HORVU6Hr1G059910.1	Barley	mitochondrion	21.43	18.47

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:AK359538	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F2D6M6	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:HORVU6Hr1G060630	EnsemblPlants:HORVU6Hr1G060630.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002005742	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D6M6]

Coordinates

chrchr6H:+:403806936..403817007

Molecular Weight (calculated)

59039.8 Da

IEP (calculated)

9.003

GRAVY (calculated)

-0.545

Length

518 amino acids

Sequence
(BLAST)

001: MDPRARYPPG TGNGRGGNPN YYGRGPPLSQ NNHHHQQQTS AAHQQQYVQR QPQPQRQQHH QDHHHHQQQH HQNHHQQQQQ QQQQQQWLRR NQITAAGTSG
101: PKVVAPPPAA AGNDSSSQDW KAQLKLPPAD TRFRTEDVTA TKGNEFEDYF LKRELLMGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTAAFCI
201: PALEKIDQDR NAIQVVIVVP TRELALQTSQ VCKELGKHLK IQVMVTTGGT SLKDDIVRLY QPVHLLVGTP GRILDLTKKG VCILKDCSML VMDEADKLLS
301: PEFQPSIEQL IRYLPASRQI LMFSATFPVT VKEFKDKYLP KPYVINLMDE LTLKGITQFY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK
401: ITELGYSCFY IHAKMLQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPK SSETYLHRVG RSGRFGHLGL AVNLITYEDR FNLYRIEQEL
501: GTEIKPIPPQ IDQAIYCQ

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.