Factsheet for HORVU3Hr1G114220.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G530600.1	Wheat	plastid	86.46	95.32
TraesCS3B01G592900.1	Wheat	plastid	86.06	95.09
KXG34209	Sorghum	plastid	73.54	82.17
Os01t0970600-01	Rice	plastid	76.97	80.38
Zm00001d011790_P001	Maize	plastid	70.1	77.63
GSMUA_Achr6P27990_001	Banana	plastid	59.19	60.41
PGSC0003DMT400023224	Potato	nucleus	38.59	59.5
KRH02098	Soybean	cytosol	27.07	58.26
CDY02574	Canola	plastid	54.34	56.28
VIT_05s0020g02870.t01	Wine grape	extracellular	55.15	56.17
Bra023712.1-P	Field mustard	plastid	54.14	56.07
CDY47205	Canola	plastid	54.14	56.07
AT5G19210.2	Thale cress	plastid	53.13	55.72
Solyc01g079800.2.1	Tomato	plastid	51.11	55.12
KRH51049	Soybean	plastid	52.12	54.66
HORVU3Hr1G015500.1	Barley	cytosol	7.47	24.18
HORVU3Hr1G015460.1	Barley	cytosol	7.47	24.18
HORVU3Hr1G050890.1	Barley	cytosol	7.88	24.07
HORVU6Hr1G094560.1	Barley	cytosol	17.98	21.6
HORVU6Hr1G020910.1	Barley	cytosol	21.21	20.79
HORVU6Hr1G060630.1	Barley	cytosol	20.61	19.69
HORVU1Hr1G095100.5	Barley	cytosol	18.38	19.4
HORVU6Hr1G059910.1	Barley	mitochondrion	23.03	18.97
HORVU1Hr1G046020.1	Barley	cytosol	20.0	17.55
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	17.17	16.8
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	17.37	13.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287MS72	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU3Hr1G114220	EnsemblPlants:HORVU3Hr1G114220.3	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B475F34	SEG:seg

Description

No Description!

Coordinates

chrchr3H:-:690411111..690414921

Molecular Weight (calculated)

54112.4 Da

IEP (calculated)

10.122

GRAVY (calculated)

-0.061

Length

495 amino acids

Sequence
(BLAST)

001: MQNGITFSLI TISGPSSTCG PAHSPALAHP LRSTATGTAY SPRRPGPMAA AASTATLSVR ARPLPSTLSS SPRAASLAPF ASRPRPRPLR TTAAATLREV
101: CSGRVPDHVL QRAEDVGYVS PTEVQEQSLP VLLSGQDCIL HAQTGSGKTL AYLLAVFAAI DVGRSSVQAL VIVPTRELGI QVTKVARLLA AKTCNVMALL
201: DGGMLTRQKS WLKAKPPAII VATVASLCQM VEKRAFSLGS IKILVIDEVD FIFGSTKQVN SLRKILNSYT AASSRQTIFA SASIPQHNRF VHDCVQHKWT
301: KSDVVHVHVN PVQPMPSHLH HTYVICSKKE RLHVLLSLLE RDAPKSVIIF VAQQSEKSKR AGNPPSSTLV VEFLRTEYKG TLEVLVLEED MNFNARATSF
401: TEVKGKGFLL VSTDIASRGF DLPQTSHIYN FDLPKTATDY LHRAGRTGRE PFSKSECSVT TLITEEEHFV LQRFQNELKF HSQRLPLESM FTFNL

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.