Factsheet for Zm00001d011790_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34209	Sorghum	plastid	89.93	90.74
TraesCS3B01G592900.1	Wheat	plastid	78.08	77.9
TraesCS3D01G530600.1	Wheat	plastid	77.85	77.51
Os01t0970600-01	Rice	plastid	81.88	77.22
HORVU3Hr1G114220.3	Barley	plastid	77.63	70.1
PGSC0003DMT400023224	Potato	nucleus	44.3	61.68
GSMUA_Achr6P27990_001	Banana	plastid	64.43	59.38
KRH02098	Soybean	cytosol	30.43	59.13
KRH51049	Soybean	plastid	61.07	57.84
Bra023712.1-P	Field mustard	plastid	61.52	57.53
CDY47205	Canola	plastid	61.52	57.53
CDY02574	Canola	plastid	61.3	57.32
AT5G19210.2	Thale cress	plastid	60.4	57.2
VIT_05s0020g02870.t01	Wine grape	extracellular	61.97	57.0
Solyc01g079800.2.1	Tomato	plastid	58.39	56.86
Zm00001d015251_P001	Maize	extracellular	22.15	24.15
Zm00001d036480_P001	Maize	plasma membrane, plastid	21.7	23.43
Zm00001d014673_P001	Maize	plastid	21.7	23.43
Zm00001d051840_P003	Maize	extracellular, mitochondrion	19.46	21.38
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	16.11	21.18
Zm00001d018542_P006	Maize	cytosol	19.46	19.64
Zm00001d009761_P004	Maize	cytosol	21.25	19.43
Zm00001d011149_P002	Maize	cytosol	7.16	19.28
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	21.03	18.69
Zm00001d017345_P002	Maize	plastid	25.95	18.27
Zm00001d051268_P004	Maize	extracellular	20.81	17.82
Zm00001d017384_P008	Maize	cytosol	20.58	17.52
Zm00001d027728_P001	Maize	extracellular, plasma membrane	18.57	16.47
Zm00001d011150_P005	Maize	cytosol	14.09	13.61
Zm00001d016350_P001	Maize	vacuole	10.51	9.33
Zm00001d016351_P002	Maize	nucleus	15.44	7.74

Protein Annotations

EntrezGene:100281356	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQK98022.1	UniProt:B6SUL6	InterPro:DEAD/DEAH_box_helicase_dom
EMBL:EU956431	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000182B0FE	EnsemblPlantsGene:Zm00001d011790	EnsemblPlants:Zm00001d011790_P001	EnsemblPlants:Zm00001d011790_T001
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 58 chloroplastic

Coordinates

chr8:+:161650580..161666693

Molecular Weight (calculated)

49649.4 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.011

Length

447 amino acids

Sequence
(BLAST)

001: MAVAAAFLSS SLLPTTPGSH LTPFTLRSRL RLFTRRAVVV NAAAATLREV CSGRVPDHVL QRAEEIGYVV PTEMQEQSLP LLLSGQDCIL HAQTGSGKTL
101: AYLLSIFSTI DFSRSSVQAL VVVPTRELGM QVTKVARLLA AKACTVMALL DGGTLKRQKS WVKAEPPAII VATVASLCQM VERRAFSLQS MRVLVIDEVD
201: FIFGSSKQVS SLRKILTSYS AASSRQTIFA SASIPQHNRF LHDCVQHKWT KGDVVHVHVH PVQPMPSHLC HKYVICTKKE RMHVLLSLLE RDAPKSAIIF
301: VAGQSERSKK AGNPPSTMVV SDFLRNEYKG SLDVMLLEED MNFNARAASF SEVKGRGFLL VSTDIASRGF DLPQTSHVYN LDLPKTATDY LHRAGRTGRQ
401: PFSRLELECC VTTLITEEEH FVLRRFQNEL KFHTQEEELP LMNCFPG

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.