Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003147_P001 | |
| Zm00001d025777_P007 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | Zm00001d003147_P001 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | Zm00001d025777_P007 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 8.73 | 52.38 |
| OQU84655 | Sorghum | cytosol | 55.75 | 36.73 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 24.21 | 30.96 |
| Solyc12g095990.1.1 | Tomato | nucleus | 25.0 | 30.51 |
| PGSC0003DMT400075339 | Potato | cytosol | 24.8 | 30.27 |
| PGSC0003DMT400075336 | Potato | cytosol | 24.4 | 30.0 |
| PGSC0003DMT400021166 | Potato | cytosol | 24.4 | 29.78 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 24.4 | 29.78 |
| Bra027387.1-P | Field mustard | cytosol | 24.21 | 29.61 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 24.21 | 29.54 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 24.21 | 29.54 |
| Zm00001d015251_P001 | Maize | extracellular | 24.01 | 29.51 |
| Zm00001d014673_P001 | Maize | plastid | 24.21 | 29.47 |
| Zm00001d036480_P001 | Maize | plasma membrane, plastid | 24.01 | 29.23 |
| Bra021517.1-P | Field mustard | cytosol | 23.81 | 29.13 |
| CDY39079 | Canola | cytosol | 23.81 | 29.13 |
| Bra001530.1-P | Field mustard | cytosol | 24.01 | 29.09 |
| CDY55205 | Canola | cytosol | 24.4 | 29.08 |
| Solyc07g040750.1.1 | Tomato | cytosol | 23.81 | 29.06 |
| CDX97528 | Canola | cytosol | 24.4 | 28.94 |
| CDY08220 | Canola | cytosol | 23.61 | 28.88 |
| AT1G54270.1 | Thale cress | cytosol | 23.61 | 28.88 |
| Bra029124.1-P | Field mustard | cytosol | 23.41 | 28.78 |
| CDY10607 | Canola | cytosol | 23.41 | 28.71 |
| CDY24057 | Canola | cytosol | 23.41 | 28.64 |
| CDY33073 | Canola | cytosol | 23.41 | 28.64 |
| CDY02469 | Canola | cytosol | 23.41 | 28.64 |
| Bra037977.1-P | Field mustard | cytosol | 23.41 | 28.64 |
| Bra030893.1-P | Field mustard | cytosol | 23.41 | 28.64 |
| Bra014365.1-P | Field mustard | cytosol | 23.41 | 28.64 |
| AT3G13920.5 | Thale cress | cytosol | 23.81 | 28.64 |
| CDX82505 | Canola | cytosol | 24.21 | 28.5 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 23.61 | 28.27 |
| AT1G72730.1 | Thale cress | cytosol | 23.21 | 28.26 |
| CDX75739 | Canola | cytosol | 24.21 | 27.98 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.02 | 27.17 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.02 | 27.17 |
| CDY32586 | Canola | cytosol | 19.44 | 25.93 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 20.44 | 25.31 |
| Zm00001d016351_P002 | Maize | nucleus | 43.85 | 24.78 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 14.48 | 23.78 |
| CDY54037 | Canola | cytosol | 12.5 | 23.6 |
| Zm00001d018542_P006 | Maize | cytosol | 20.24 | 23.02 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 24.21 | 22.18 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 27.38 | 21.56 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 13.69 | 20.29 |
| CDY72259 | Canola | cytosol | 8.73 | 19.82 |
| Os02t0221300-01 | Rice | cytosol | 34.52 | 19.75 |
| CDY67069 | Canola | cytosol | 3.77 | 18.81 |
| CDY53867 | Canola | cytosol | 15.67 | 18.72 |
| CDY11154 | Canola | cytosol | 7.34 | 18.32 |
| Bra016037.1-P | Field mustard | cytosol | 25.0 | 17.33 |
| CDX72939 | Canola | mitochondrion, nucleus | 15.67 | 16.95 |
| Zm00001d011149_P002 | Maize | cytosol | 5.36 | 16.27 |
| Zm00001d051268_P004 | Maize | extracellular | 15.48 | 14.94 |
| Zm00001d009761_P004 | Maize | cytosol | 14.48 | 14.93 |
| Zm00001d017384_P008 | Maize | cytosol | 15.48 | 14.86 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 14.29 | 14.31 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 14.09 | 14.09 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 33.53 | 13.27 |
| Zm00001d011150_P005 | Maize | cytosol | 12.1 | 13.17 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 33.93 | 12.81 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 33.93 | 12.72 |
| CDY68148 | Canola | nucleus | 17.66 | 12.04 |
| Zm00001d017345_P002 | Maize | plastid | 13.89 | 11.02 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 2.58 | 10.57 |
| Zm00001d011790_P001 | Maize | plastid | 9.33 | 10.51 |
| CDY49860 | Canola | cytosol | 0.79 | 3.2 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6H6W6 | ProteinID:AQK70529.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 | InterPro:RNA-helicase_DEAD-box_CS |
| SUPFAM:SSF52540 | SignalP:SignalP-noTM | UniParc:UPI000220E53A | EnsemblPlantsGene:Zm00001d016350 | EnsemblPlants:Zm00001d016350_P001 | EnsemblPlants:Zm00001d016350_T001 |
| SEG:seg | : | : | : | : | : |
Description
Eukaryotic initiation factor 4A-2
Coordinates
chr5:-:158788139..158790985
Molecular Weight (calculated)
56219.1 Da
IEP (calculated)
9.093
GRAVY (calculated)
-0.454
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVEKKVFSC SLSLCFRLQL LTSRAEGHMS PQAVQRVRVV LKSRLCQSNN YLLLHLCKVR GALLAMTHRT IWSSAERNTD GDCSQYCALI TSSLWKLSDG
101: DCCWELRECG RSFLACFSSE DRVSSRLVML TVEQDRAEDE GSVKEHGKEL NAAQSIFPEE PRSLAGEIKD KKTNAPAATR ASTKRTTMGN SKPGGCSLGL
201: TTDRHSAKLS DRRADARPDD VRDRESDRST RPVPRCQGLH LQSCTYRRHE CPRGPGNCVS SRSAQVAIGT PGRVLDLLGR DALRRDHIRM LVLDEADELL
301: TGGFKDQVSY LPACRHVASI IQYLPARIQV GLFSGAFSSE ALETSHWFMD DDKHVTIKVP RGEELKDIGI KQFYFYRRVD SKEEKARSAL RRALLDALEP
401: AARTVVFANT KQGVRTLVQD ARGKGYTVSA SHGGMSQLGR DDAAVQEFRA GSSRVLVATD LRGTSLGRVP VVINYDLPTQ LMQYISRVQQ QRRCCGHQFR
501: DSCR
101: DCCWELRECG RSFLACFSSE DRVSSRLVML TVEQDRAEDE GSVKEHGKEL NAAQSIFPEE PRSLAGEIKD KKTNAPAATR ASTKRTTMGN SKPGGCSLGL
201: TTDRHSAKLS DRRADARPDD VRDRESDRST RPVPRCQGLH LQSCTYRRHE CPRGPGNCVS SRSAQVAIGT PGRVLDLLGR DALRRDHIRM LVLDEADELL
301: TGGFKDQVSY LPACRHVASI IQYLPARIQV GLFSGAFSSE ALETSHWFMD DDKHVTIKVP RGEELKDIGI KQFYFYRRVD SKEEKARSAL RRALLDALEP
401: AARTVVFANT KQGVRTLVQD ARGKGYTVSA SHGGMSQLGR DDAAVQEFRA GSSRVLVATD LRGTSLGRVP VVINYDLPTQ LMQYISRVQQ QRRCCGHQFR
501: DSCR
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
Arabidopsis Description
TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.