Factsheet for Zm00001d003147_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014065_P001
Zm00001d014698_P001
Zm00001d015233_P001
Zm00001d015410_P002
Zm00001d016350_P001
Zm00001d016351_P002
Zm00001d021067_P001
Zm00001d032775_P002
Zm00001d053775_P001
Zm00001d053890_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Zm00001d014698_P001	AT1G27360.1	21798944
AT2G24050.1	Zm00001d015233_P001	AT1G27360.1	21798944
AT2G24050.1	Zm00001d015410_P002	AT1G27360.1	21798944
AT2G24050.1	Zm00001d053775_P001	AT1G27360.1	21798944
AT2G24050.1	Zm00001d053890_P003	AT1G27360.1	21798944
AT2G24050.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT2G24050.1	Zm00001d014065_P001	AT5G35620.1	21798944
AT2G24050.1	Zm00001d032775_P002	AT5G35620.1	21798944
AT5G57870.1	Zm00001d016350_P001	AT1G72730.1	21798944
AT5G57870.1	Zm00001d016351_P002	AT1G72730.1	21798944
AT5G57870.1	Zm00001d021067_P001	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12452	Sorghum	cytosol	93.26	92.67
Zm00001d025777_P007	Maize	plastid	90.46	90.57
TraesCS2B01G373600.1	Wheat	cytosol	77.86	77.57
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	77.48	77.28
TraesCS2A01G354900.1	Wheat	cytosol	77.61	77.22
HORVU2Hr1G086240.1	Barley	cytosol	73.92	77.16
Os04t0499300-01	Rice	plastid	76.97	75.06
GSMUA_Achr4P06000_001	Banana	cytosol	3.82	73.17
VIT_11s0037g00490.t01	Wine grape	plastid	62.34	61.71
Solyc07g005810.2.1	Tomato	plastid	59.16	60.16
GSMUA_Achr4P05990_001	Banana	cytosol	11.2	59.86
Solyc12g009960.1.1	Tomato	nucleus	58.78	59.77
GSMUA_AchrUn_...	Banana	cytosol	56.62	59.65
PGSC0003DMT400020464	Potato	cytosol	58.4	59.38
CDY69274	Canola	cytosol, mitochondrion	24.68	59.33
PGSC0003DMT400029102	Potato	cytosol, plastid	58.78	59.23
GSMUA_Achr9P22750_001	Banana	plastid	55.6	58.74
KRH72326	Soybean	endoplasmic reticulum	58.52	58.67
KRH55033	Soybean	endoplasmic reticulum	57.76	58.58
KRH63081	Soybean	endoplasmic reticulum	57.51	58.4
KRH03030	Soybean	endoplasmic reticulum	58.52	58.3
CDY28211	Canola	mitochondrion	34.73	57.84
AT5G57870.1	Thale cress	plastid	56.23	56.67
CDY39236	Canola	cytosol	52.8	56.16
CDY32742	Canola	plastid	54.96	56.1
Bra020407.1-P	Field mustard	plastid	54.83	55.97
Bra024051.1-P	Field mustard	cytosol	53.18	55.88
CDY28203	Canola	cytosol	36.26	55.77
Bra011218.1-P	Field mustard	plastid	38.42	55.21
CDY02774	Canola	plastid	54.2	55.18
CDX72262	Canola	cytosol	52.16	54.96
CDX68687	Canola	plastid	52.04	54.68
Bra011211.1-P	Field mustard	plastid	51.91	54.47
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.07	54.36
AT2G24050.1	Thale cress	plastid	51.27	53.95
HORVU6Hr1G023180.1	Barley	cytosol	19.47	51.86
GSMUA_Achr3P28040_001	Banana	cytosol	28.5	49.67
GSMUA_Achr4P05970_001	Banana	cytosol	8.52	44.37
Solyc07g005780.1.1	Tomato	cytosol	25.19	44.0
AT4G30680.1	Thale cress	mitochondrion, plastid	14.12	42.21
AT1G62410.1	Thale cress	cytosol	11.96	42.15
GSMUA_Achr4P12750_001	Banana	cytosol	61.32	41.55
Zm00001d017310_P001	Maize	plastid	7.51	16.95
Zm00001d021741_P001	Maize	nucleus	25.45	10.98
Zm00001d006573_P002	Maize	cytosol	24.94	10.68
Zm00001d025979_P007	Maize	nucleus	23.28	10.05

Protein Annotations

Gene3D:1.25.40.180	EntrezGene:103646262	MapMan:17.4.2.4.2	UniProt:A0A1D6E703	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	ProteinID:ONM16222.1	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253
PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0002210584	EnsemblPlantsGene:Zm00001d003147
EnsemblPlants:Zm00001d003147_P001	EnsemblPlants:Zm00001d003147_T001	SEG:seg	:	:	:

Description

Eukaryotic translation initiation factor isoform 4G-2

Coordinates

chr2:+:33764519..33769876

Molecular Weight (calculated)

86468.8 Da

IEP (calculated)

8.365

GRAVY (calculated)

-0.458

Length

786 amino acids

Sequence
(BLAST)

001: MQPDQPVISL RPGGGGGPRA GRLFSPAFAT SVSGDFLRPH GGGASGISKI GDSHFEPRER VRYTRDQLLE LREIVDVSEE ILRIKQEIDV ELHGEDQSWV
101: RNDSTVQGQA QAQTQAQNRY AETDSRDWRA RSAQLTPTNE EKSWDNIREA KEAYASSGRQ QEQANRQDQL SSQFASKAQV GPTPALIKAE VPWSARRGNL
201: SEKERVLKTV KGILNKLTPE KFDLLKGQLM EAGITTADIL KDVISLIFEK AVFEPTFCPM YAQLCSDLNE KLPTFPSEEP GGKEITFKRV ILNNCQEAFE
301: GASNLRAEIS KLTGPDQGME RRDKERLVKL RTLGNIRLIG ELLKQKMVPE KIVHHIVMEL LGSGTDKKPC PEEEDVEAIC HFFNTIGKQL DENTKSRRIN
401: DTYFIQMKEL TMNPQLAPRL RFMVRDVIDL RSNNWVPRRE EIKAKTISEI HSEAEKNLGL RPGAASVIRN GRSSPGGPLS PGGGFPMNRP GTGGMMPGMP
501: GSRKMPGMPG LDNDNWEVPR SKSMPRGDSI RNQGLLLNKP STVHKTSSIN TRLLPQGSGA ALIGKSALLG TGVSASRPLS FTPGPTPAQT TPKPIRAAPA
601: VVPAPDKQAS APKGNTAELQ KKTIALLEEY FGIRILDEAH QCIVELQSPD YYPEIVKEAV NLALDKGTNF VDPLVRLLEH LYTKKIFKTQ DLESGCLLYG
701: TLLDDIGIDL PKAPAQFGEI IARLTLLGAL RFEALEVILK KMEDTYNRKA VSNAFMKTLE ANPSGQAILG SPAAAAVIDA CNSLLE

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.