Factsheet for Zm00001d014698_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013465_P001
Zm00001d033680_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Zm00001d013465_P001	AT1G14920.1	22942378
AT1G27360.1	Zm00001d033680_P001	AT1G14920.1	22942378
AT1G27360.1	Zm00001d013465_P001	AT2G01570.1	22942378
AT1G27360.1	Zm00001d033680_P001	AT2G01570.1	22942378
AT1G27370.1	Zm00001d013465_P001	AT1G14920.1	22942378
AT1G27370.1	Zm00001d033680_P001	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77017	Sorghum	nucleus	87.7	87.5
Os06t0703500-02	Rice	nucleus	59.68	55.16
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	50.34	41.62
Zm00001d053890_P003	Maize	nucleus	45.1	41.08
GSMUA_Achr5P21990_001	Banana	nucleus	40.32	40.88
VIT_01s0010g03710.t01	Wine grape	nucleus	39.41	36.27
VIT_11s0065g00170.t01	Wine grape	nucleus	38.04	35.91
PGSC0003DMT400084734	Potato	nucleus	37.81	35.7
Solyc05g015510.2.1	Tomato	nucleus	37.13	35.21
KRG97402	Soybean	nucleus	34.4	34.87
Bra033671.1-P	Field mustard	nucleus	28.47	34.53
KRH31506	Soybean	nucleus	34.62	34.31
CDY43604	Canola	nucleus	29.39	33.51
PGSC0003DMT400068752	Potato	nucleus	29.16	33.25
CDY32959	Canola	nucleus	29.39	33.08
Bra027478.1-P	Field mustard	nucleus	29.39	33.08
CDY03913	Canola	nucleus	27.56	32.61
AT5G43270.1	Thale cress	nucleus	30.52	31.98
Zm00001d015410_P002	Maize	nucleus	24.15	31.93
Solyc04g045560.2.1	Tomato	nucleus	25.28	31.71
Bra030040.1-P	Field mustard	nucleus	28.02	31.54
CDY15713	Canola	nucleus	28.02	31.54
Zm00001d053775_P001	Maize	nucleus	23.69	31.42
CDY27611	Canola	nucleus	25.97	31.23
CDX84928	Canola	nucleus	25.74	31.04
Bra032822.1-P	Field mustard	nucleus	25.74	30.96
AT1G27360.1	Thale cress	nucleus	27.56	30.79
CDY03914	Canola	nucleus	25.74	30.38
AT1G27370.1	Thale cress	nucleus	27.33	30.3
Bra032823.1-P	Field mustard	nucleus	22.55	30.18
CDY27612	Canola	nucleus	22.55	30.09
CDY67700	Canola	nucleus	23.69	30.06
CDY15712	Canola	nucleus	25.51	29.95
Bra010949.1-P	Field mustard	nucleus	24.83	29.78
Bra030041.1-P	Field mustard	nucleus	25.28	29.68
CDY11816	Canola	nucleus	24.6	29.59
CDX84927	Canola	nucleus	23.92	28.61
CDY22356	Canola	nucleus	32.57	27.55
CDY47812	Canola	nucleus	32.12	27.33
Zm00001d021573_P001	Maize	mitochondrion	11.85	25.24
Zm00001d006451_P001	Maize	mitochondrion	13.21	22.83
Zm00001d012015_P001	Maize	nucleus	18.91	22.13
Zm00001d042319_P001	Maize	nucleus	20.5	22.0
Zm00001d020941_P001	Maize	nucleus	18.68	21.69
Zm00001d006091_P001	Maize	nucleus	20.27	21.04
Zm00001d006028_P001	Maize	nucleus	17.77	20.37
Zm00001d002005_P001	Maize	nucleus	18.0	19.8
Zm00001d026491_P001	Maize	nucleus	17.77	19.7
Zm00001d049824_P002	Maize	nucleus	19.36	19.54
Zm00001d049822_P001	Maize	nucleus	19.13	19.44
Zm00001d021056_P001	Maize	nucleus	20.5	19.35
Zm00001d052890_P001	Maize	nucleus	17.31	18.63
Zm00001d031451_P001	Maize	nucleus	17.08	18.61
Zm00001d026175_P001	Maize	nucleus	16.86	18.55
Zm00001d053756_P001	Maize	nucleus	17.08	18.47
Zm00001d015451_P001	Maize	nucleus	17.77	17.69
Zm00001d036692_P001	Maize	nucleus	17.31	17.51
Zm00001d046906_P001	Maize	nucleus	16.86	17.45

Protein Annotations

EntrezGene:100283160	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:AQK66911.1	ProteinID:AQK66912.1	ProteinID:AQK66913.1
ProteinID:AQK66917.1	UniProt:B6TF72	EMBL:EU963637	EMBL:EU969824	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EMBL:KJ727979	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF65	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000182DFF9
EnsemblPlantsGene:Zm00001d014698	EnsemblPlants:Zm00001d014698_P001	EnsemblPlants:Zm00001d014698_T001	SEG:seg	:	:

Description

SBP-transcription factor 25Squamosa promoter-binding-like protein 11

Coordinates

chr5:-:59822722..59826489

Molecular Weight (calculated)

47114.9 Da

IEP (calculated)

9.253

GRAVY (calculated)

-0.501

Length

439 amino acids

Sequence
(BLAST)

001: MGSFGMNWNQ KDPMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSNSELGH GSSKSSISAS IDSPSGVGNS LEFNFAAVER HVKNTGTNGR VDDSGNSPSS
101: MIAFNQGEPL ISLKLGKRAY FENACGGQDA KVSAASDVTS AASVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKDYNRKHK VCVVHSKATK VVVAGLERRF
201: CQQCSRFHGL AEFDQNKRSC RRRLMHHNAR RRKPQADTIS FNSSTMFYDT RQRTNLFFSQ PLYGQVRSNA GSSWDNLGGL KFMETKHPPV HPTKTASPDE
301: LHFSALQITS AAAHTGHHHD LDGFMAFKGT STKVLNQGVE AWAAASSSNN GGPEGGRALS LLSDGSWGSS SAVIQQPTSH ADAGALLPPL ATVAVSNAAA
401: AAGHPLDPSP GRFWPQDDHP PLVDGPATQI PELAHLRIW

Best Arabidopsis Sequence Match ( AT1G27370.6 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.