Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27611 | Canola | nucleus | 96.43 | 96.16 |
| CDY15713 | Canola | nucleus | 79.12 | 73.85 |
| CDY03913 | Canola | nucleus | 74.45 | 73.05 |
| CDY27612 | Canola | nucleus | 62.09 | 68.69 |
| AT1G27360.1 | Thale cress | nucleus | 73.63 | 68.19 |
| CDX84927 | Canola | nucleus | 64.84 | 64.31 |
| CDY67700 | Canola | nucleus | 60.71 | 63.87 |
| CDY03914 | Canola | nucleus | 64.29 | 62.9 |
| CDY11816 | Canola | nucleus | 62.64 | 62.47 |
| CDY15712 | Canola | nucleus | 63.74 | 62.03 |
| Os02t0139400-01 | Rice | nucleus | 29.95 | 38.65 |
| CDY17204 | Canola | nucleus | 13.74 | 35.21 |
| CDY37684 | Canola | nucleus | 13.46 | 34.75 |
| CDY57212 | Canola | nucleus | 13.46 | 34.75 |
| CDY27935 | Canola | nucleus | 14.01 | 34.69 |
| KRG97402 | Soybean | nucleus | 38.46 | 32.33 |
| CDY24113 | Canola | nucleus | 14.01 | 31.68 |
| CDY50515 | Canola | nucleus | 13.46 | 31.21 |
| KRH31506 | Soybean | nucleus | 37.91 | 31.15 |
| Os02t0174100-02 | Rice | nucleus | 21.43 | 31.08 |
| CDY32959 | Canola | nucleus | 33.24 | 31.03 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 29.12 | 30.29 |
| CDY43604 | Canola | nucleus | 31.87 | 30.13 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 34.07 | 29.81 |
| CDX97645 | Canola | nucleus | 14.56 | 29.61 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 37.09 | 29.48 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 37.36 | 29.25 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 25.82 | 28.66 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 25.55 | 28.62 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 25.55 | 28.53 |
| CDY61210 | Canola | nucleus | 14.01 | 28.49 |
| CDX98540 | Canola | nucleus | 14.01 | 28.49 |
| CDY20128 | Canola | nucleus | 13.74 | 28.41 |
| CDY32310 | Canola | nucleus | 13.74 | 28.41 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 33.79 | 28.41 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 34.07 | 28.31 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 25.27 | 28.13 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 35.99 | 27.93 |
| CDY25876 | Canola | nucleus | 13.46 | 27.84 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 34.62 | 27.75 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.37 | 27.75 |
| Zm00001d015410_P002 | Maize | nucleus | 25.27 | 27.71 |
| EES04609 | Sorghum | nucleus | 25.55 | 27.6 |
| Zm00001d053775_P001 | Maize | nucleus | 24.73 | 27.19 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 34.07 | 26.72 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 34.62 | 26.64 |
| EES04495 | Sorghum | nucleus | 34.89 | 26.46 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 34.34 | 26.43 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 34.34 | 26.32 |
| CDX79544 | Canola | nucleus | 13.46 | 26.2 |
| Zm00001d014698_P001 | Maize | nucleus | 31.04 | 25.74 |
| OQU77017 | Sorghum | nucleus | 31.04 | 25.68 |
| Os06t0663500-00 | Rice | nucleus | 24.18 | 25.66 |
| Os06t0703500-02 | Rice | nucleus | 33.24 | 25.47 |
| GSMUA_Achr10P... | Banana | nucleus | 35.16 | 25.4 |
| GSMUA_Achr10P... | Banana | nucleus | 33.79 | 25.26 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 35.16 | 25.25 |
| CDY47812 | Canola | nucleus | 35.16 | 24.81 |
| CDX95958 | Canola | nucleus | 20.05 | 24.41 |
| CDY22356 | Canola | nucleus | 34.62 | 24.28 |
| CDX90071 | Canola | nucleus | 20.33 | 23.72 |
| Zm00001d053890_P003 | Maize | nucleus | 31.32 | 23.65 |
| CDY15132 | Canola | nucleus | 15.11 | 23.61 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 34.34 | 23.54 |
| CDY69014 | Canola | nucleus | 20.05 | 22.88 |
| CDY50300 | Canola | nucleus | 20.6 | 22.87 |
| CDY61750 | Canola | nucleus | 19.23 | 22.73 |
| CDX96251 | Canola | nucleus | 20.33 | 22.56 |
| CDX81606 | Canola | nucleus | 20.6 | 22.52 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 32.14 | 22.2 |
| CDX98259 | Canola | nucleus | 19.51 | 21.85 |
| CDY06881 | Canola | nucleus | 21.43 | 21.49 |
| CDX79888 | Canola | nucleus | 21.7 | 21.47 |
| CDY45826 | Canola | nucleus | 20.05 | 21.41 |
| CDY53504 | Canola | nucleus | 21.7 | 21.35 |
| CDY38043 | Canola | nucleus | 19.51 | 21.19 |
| CDY47656 | Canola | nucleus | 18.68 | 20.99 |
| CDY14818 | Canola | nucleus | 21.15 | 20.98 |
| CDX71667 | Canola | nucleus | 20.6 | 20.89 |
| CDX84872 | Canola | nucleus | 19.51 | 20.82 |
| CDY34028 | Canola | nucleus | 19.78 | 20.69 |
| CDX67715 | Canola | nucleus | 17.86 | 20.57 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.1 | 6.9 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078DCB6 | EnsemblPlants:CDX84928 | ProteinID:CDX84928 | ProteinID:CDX84928.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00142280001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EEA500 | SEG:seg | : | : | : | : |
Description
BnaC05g21270D
Coordinates
chrLK031839:-:305756..307707
Molecular Weight (calculated)
40725.6 Da
IEP (calculated)
8.866
GRAVY (calculated)
-0.707
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMRSPLL WDWENLIISN PSNDKKQLTT TTTTSEWEME KGEGIESLFP CLDGLQRVSN DSTTSFWHTT SVSKSSQSIS ANSASPIIRQ TKLASENSPG
101: DSCSNIDFVQ VKTSTAVESD LCLKLGKRTY SGRDVSTKLL APCVVTRKKS KSCGQSSMQV PRCQVDGCEL DLSSAKDYHR KHRVCETHSK CPKVTVSGVE
201: RRFCQQCSRL HAVSEFDEKK RSCRKRLSHH NARRRKSQGV FPFNPERVYD QRQHTNVVWG TTCDTKPTQR ESGFTLSFQR DYGSKEEQLF ASSNHSLSAY
301: QTSGGFSAGK NKFQLGAGEY SEVLHQSQDF HRAFSLLSTS SGPLVHPHAQ QPLSLLFSFD GVPK
101: DSCSNIDFVQ VKTSTAVESD LCLKLGKRTY SGRDVSTKLL APCVVTRKKS KSCGQSSMQV PRCQVDGCEL DLSSAKDYHR KHRVCETHSK CPKVTVSGVE
201: RRFCQQCSRL HAVSEFDEKK RSCRKRLSHH NARRRKSQGV FPFNPERVYD QRQHTNVVWG TTCDTKPTQR ESGFTLSFQR DYGSKEEQLF ASSNHSLSAY
301: QTSGGFSAGK NKFQLGAGEY SEVLHQSQDF HRAFSLLSTS SGPLVHPHAQ QPLSLLFSFD GVPK
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
Arabidopsis Description
SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.