Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17204 | Canola | nucleus | 90.48 | 93.66 |
| AT2G33810.1 | Thale cress | nucleus | 72.79 | 81.68 |
| CDY57212 | Canola | nucleus | 71.43 | 74.47 |
| CDY37684 | Canola | nucleus | 71.43 | 74.47 |
| Solyc10g009080.2.1 | Tomato | nucleus | 55.78 | 60.74 |
| PGSC0003DMT400058753 | Potato | nucleus | 55.1 | 60.0 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 55.78 | 58.57 |
| CDX79544 | Canola | nucleus | 73.47 | 57.75 |
| PGSC0003DMT400076399 | Potato | nucleus | 52.38 | 56.62 |
| Solyc02g077920.2.1 | Tomato | nucleus | 51.02 | 55.15 |
| CDY50515 | Canola | nucleus | 53.06 | 49.68 |
| KRH10909 | Soybean | nucleus | 46.26 | 49.28 |
| KRH21401 | Soybean | nucleus | 45.58 | 48.55 |
| CDY24113 | Canola | nucleus | 52.38 | 47.83 |
| KRH20415 | Soybean | nucleus | 44.9 | 46.48 |
| KRH50085 | Soybean | nucleus | 45.58 | 45.89 |
| CDY25876 | Canola | nucleus | 53.74 | 44.89 |
| CDY61210 | Canola | nucleus | 53.74 | 44.13 |
| CDX97645 | Canola | nucleus | 51.02 | 41.9 |
| CDX98540 | Canola | nucleus | 50.34 | 41.34 |
| CDY20128 | Canola | nucleus | 48.98 | 40.91 |
| CDY32310 | Canola | nucleus | 47.62 | 39.77 |
| EER97257 | Sorghum | nucleus | 43.54 | 29.77 |
| Os07t0505200-01 | Rice | nucleus | 43.54 | 29.63 |
| Zm00001d021573_P001 | Maize | mitochondrion | 38.1 | 27.18 |
| KXG36284 | Sorghum | nucleus | 37.41 | 25.23 |
| Zm00001d006451_P001 | Maize | mitochondrion | 42.86 | 24.8 |
| CDX90071 | Canola | nucleus | 38.78 | 18.27 |
| CDX95958 | Canola | nucleus | 36.73 | 18.06 |
| CDY38043 | Canola | nucleus | 40.82 | 17.91 |
| CDY61750 | Canola | nucleus | 37.41 | 17.86 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 6.8 | 17.24 |
| CDY15132 | Canola | nucleus | 27.21 | 17.17 |
| CDY47656 | Canola | nucleus | 37.41 | 16.98 |
| CDY69014 | Canola | nucleus | 36.73 | 16.93 |
| CDX98259 | Canola | nucleus | 37.41 | 16.92 |
| CDY50300 | Canola | nucleus | 36.73 | 16.46 |
| CDX81606 | Canola | nucleus | 36.73 | 16.22 |
| CDX96251 | Canola | nucleus | 36.05 | 16.16 |
| CDX84872 | Canola | nucleus | 37.41 | 16.13 |
| CDY45826 | Canola | nucleus | 37.41 | 16.13 |
| CDY27612 | Canola | nucleus | 36.05 | 16.11 |
| CDX71667 | Canola | nucleus | 38.78 | 15.88 |
| CDX67715 | Canola | nucleus | 34.01 | 15.82 |
| CDY06881 | Canola | nucleus | 38.78 | 15.7 |
| CDY14818 | Canola | nucleus | 38.78 | 15.53 |
| CDY34028 | Canola | nucleus | 36.05 | 15.23 |
| CDY67700 | Canola | nucleus | 35.37 | 15.03 |
| CDX79888 | Canola | nucleus | 37.41 | 14.95 |
| CDY53504 | Canola | nucleus | 37.41 | 14.86 |
| CDX84927 | Canola | nucleus | 36.73 | 14.71 |
| CDY03913 | Canola | nucleus | 36.73 | 14.56 |
| CDY11816 | Canola | nucleus | 35.37 | 14.25 |
| CDX84928 | Canola | nucleus | 34.69 | 14.01 |
| CDY27611 | Canola | nucleus | 34.69 | 13.97 |
| CDY15712 | Canola | nucleus | 35.37 | 13.9 |
| CDY15713 | Canola | nucleus | 36.73 | 13.85 |
| CDY32959 | Canola | nucleus | 36.05 | 13.59 |
| CDY43604 | Canola | nucleus | 35.37 | 13.51 |
| CDY03914 | Canola | nucleus | 34.01 | 13.44 |
| CDY47812 | Canola | nucleus | 38.1 | 10.85 |
| CDY22356 | Canola | nucleus | 37.41 | 10.6 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078GMY5 | UniProt:A0A078GMY5 | EnsemblPlants:CDY27935 | ProteinID:CDY27935 |
| ProteinID:CDY27935.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00038835001 |
| InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PIRSF:PIRSF037575 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_fam | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EE3516 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng05200DSquamosa promoter-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMY5]
Coordinates
chrLK032212:-:310775..311403
Molecular Weight (calculated)
17010.6 Da
IEP (calculated)
7.504
GRAVY (calculated)
-1.376
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMKGSKAEA KRSLREMSEE EEEDTFEEEE DEEEALEKKQ KGKATSSSSS SAGACQVERC TADMSRAKQY HRRHKVCEFH AKAPVVRIYG LHQRFCQQCS
101: RFHELGEFDE SKRSCRRRLA GHNERRRKSA SEGEGERSQD HIGYQGY
101: RFHELGEFDE SKRSCRRRLA GHNERRRKSA SEGEGERSQD HIGYQGY
001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
Arabidopsis Description
SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.