Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37684 | Canola | nucleus | 96.45 | 96.45 |
| AT2G33810.1 | Thale cress | nucleus | 75.89 | 81.68 |
| CDY17204 | Canola | nucleus | 73.76 | 73.24 |
| CDY27935 | Canola | nucleus | 74.47 | 71.43 |
| CDX79544 | Canola | nucleus | 75.18 | 56.68 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 55.32 | 55.71 |
| PGSC0003DMT400058753 | Potato | nucleus | 53.19 | 55.56 |
| Solyc10g009080.2.1 | Tomato | nucleus | 51.77 | 54.07 |
| PGSC0003DMT400076399 | Potato | nucleus | 51.06 | 52.94 |
| Solyc02g077920.2.1 | Tomato | nucleus | 50.35 | 52.21 |
| KRH21401 | Soybean | nucleus | 45.39 | 46.38 |
| KRH10909 | Soybean | nucleus | 45.39 | 46.38 |
| KRH50085 | Soybean | nucleus | 46.81 | 45.21 |
| KRH20415 | Soybean | nucleus | 45.39 | 45.07 |
| CDY24113 | Canola | nucleus | 47.52 | 41.61 |
| CDY50515 | Canola | nucleus | 46.1 | 41.4 |
| CDY25876 | Canola | nucleus | 47.52 | 38.07 |
| CDY61210 | Canola | nucleus | 46.81 | 36.87 |
| CDX97645 | Canola | nucleus | 46.1 | 36.31 |
| CDX98540 | Canola | nucleus | 45.39 | 35.75 |
| CDY20128 | Canola | nucleus | 43.97 | 35.23 |
| CDY32310 | Canola | nucleus | 42.55 | 34.09 |
| EER97257 | Sorghum | nucleus | 43.26 | 28.37 |
| Zm00001d021573_P001 | Maize | mitochondrion | 41.13 | 28.16 |
| Os07t0505200-01 | Rice | nucleus | 42.55 | 27.78 |
| KXG36284 | Sorghum | nucleus | 40.43 | 26.15 |
| Zm00001d006451_P001 | Maize | mitochondrion | 41.84 | 23.23 |
| CDX95958 | Canola | nucleus | 39.01 | 18.39 |
| CDX90071 | Canola | nucleus | 39.01 | 17.63 |
| CDY61750 | Canola | nucleus | 38.3 | 17.53 |
| CDY38043 | Canola | nucleus | 41.13 | 17.31 |
| CDY50300 | Canola | nucleus | 39.72 | 17.07 |
| CDY69014 | Canola | nucleus | 38.3 | 16.93 |
| CDX81606 | Canola | nucleus | 39.72 | 16.82 |
| CDX96251 | Canola | nucleus | 39.01 | 16.77 |
| CDY47656 | Canola | nucleus | 38.3 | 16.67 |
| CDY15132 | Canola | nucleus | 26.95 | 16.31 |
| CDX98259 | Canola | nucleus | 37.59 | 16.31 |
| CDY34028 | Canola | nucleus | 37.59 | 15.23 |
| CDY27612 | Canola | nucleus | 35.46 | 15.2 |
| CDX84872 | Canola | nucleus | 36.17 | 14.96 |
| CDY45826 | Canola | nucleus | 36.17 | 14.96 |
| CDX71667 | Canola | nucleus | 37.59 | 14.76 |
| CDX67715 | Canola | nucleus | 32.62 | 14.56 |
| CDY14818 | Canola | nucleus | 36.88 | 14.17 |
| CDX79888 | Canola | nucleus | 36.88 | 14.13 |
| CDY53504 | Canola | nucleus | 36.88 | 14.05 |
| CDY06881 | Canola | nucleus | 36.17 | 14.05 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 5.67 | 13.79 |
| CDY67700 | Canola | nucleus | 33.33 | 13.58 |
| CDY03913 | Canola | nucleus | 35.46 | 13.48 |
| CDX84928 | Canola | nucleus | 34.75 | 13.46 |
| CDY27611 | Canola | nucleus | 34.75 | 13.42 |
| CDX84927 | Canola | nucleus | 34.75 | 13.35 |
| CDY15713 | Canola | nucleus | 36.17 | 13.08 |
| CDY43604 | Canola | nucleus | 35.46 | 12.99 |
| CDY11816 | Canola | nucleus | 33.33 | 12.88 |
| CDY32959 | Canola | nucleus | 35.46 | 12.82 |
| CDY15712 | Canola | nucleus | 32.62 | 12.3 |
| CDY03914 | Canola | nucleus | 31.91 | 12.1 |
| CDY22356 | Canola | nucleus | 37.59 | 10.21 |
| CDY47812 | Canola | nucleus | 36.17 | 9.88 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078J475 | UniProt:A0A078J475 | EnsemblPlants:CDY57212 | ProteinID:CDY57212 |
| ProteinID:CDY57212.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00020688001 |
| InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PIRSF:PIRSF037575 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_fam | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EE96BF |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g44230DSquamosa promoter-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078J475]
Coordinates
chrLK033555:-:9849..10564
Molecular Weight (calculated)
16485.8 Da
IEP (calculated)
6.668
GRAVY (calculated)
-1.521
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTRRSRAGE KRSLREMSEE EEEDEEDEET FEGEEDEDTS DEEAVEKKQK GKATTSSSSG TGACQVERCT ADMSRAKQYH KRHKVCEFHA KAPLVRISGL
101: YQRFCQQCSR FHELSEFDDT KRSCRRRLAG HNERRRRNTT Q
101: YQRFCQQCSR FHELSEFDDT KRSCRRRLAG HNERRRRNTT Q
001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
Arabidopsis Description
SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.