Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003305.1-P | Field mustard | nucleus | 92.92 | 95.57 |
| CDX67715 | Canola | nucleus | 91.08 | 93.67 |
| AT3G57920.1 | Thale cress | nucleus | 77.85 | 71.47 |
| CDY47656 | Canola | nucleus | 69.85 | 70.06 |
| CDY61750 | Canola | nucleus | 65.54 | 69.16 |
| CDX79888 | Canola | nucleus | 55.08 | 48.64 |
| CDY14818 | Canola | nucleus | 53.85 | 47.68 |
| CDY06881 | Canola | nucleus | 53.23 | 47.66 |
| CDY53504 | Canola | nucleus | 54.15 | 47.57 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 44.92 | 38.52 |
| CDY17204 | Canola | nucleus | 16.62 | 38.03 |
| CDY57212 | Canola | nucleus | 16.31 | 37.59 |
| CDY50515 | Canola | nucleus | 18.15 | 37.58 |
| CDY27935 | Canola | nucleus | 16.92 | 37.41 |
| CDY37684 | Canola | nucleus | 15.69 | 36.17 |
| KRH67040 | Soybean | nucleus | 40.62 | 35.97 |
| KRG95361 | Soybean | nucleus | 39.38 | 35.65 |
| Solyc10g078700.1.1 | Tomato | nucleus | 39.38 | 34.41 |
| CDY24113 | Canola | nucleus | 16.92 | 34.16 |
| PGSC0003DMT400029751 | Potato | nucleus | 39.08 | 34.14 |
| CDY25876 | Canola | nucleus | 18.46 | 34.09 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 29.85 | 34.04 |
| KRH38141 | Soybean | nucleus, plastid | 37.85 | 32.98 |
| CDY20128 | Canola | nucleus | 17.54 | 32.39 |
| CDY61210 | Canola | nucleus | 17.54 | 31.84 |
| CDY32310 | Canola | nucleus | 17.23 | 31.82 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 32.62 | 31.09 |
| KRH71914 | Soybean | nucleus, plastid | 34.15 | 31.01 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 32.62 | 30.9 |
| CDX97645 | Canola | nucleus | 16.92 | 30.73 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 32.0 | 30.23 |
| CDX98540 | Canola | nucleus | 16.62 | 30.17 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 31.08 | 29.19 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 30.46 | 27.73 |
| CDX79544 | Canola | nucleus | 15.69 | 27.27 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 34.15 | 27.01 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 29.85 | 26.29 |
| Zm00001d006028_P001 | Maize | nucleus | 30.46 | 25.85 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 30.77 | 25.77 |
| Zm00001d020941_P001 | Maize | nucleus | 29.85 | 25.66 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.38 | 25.61 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 30.77 | 25.25 |
| CDX95958 | Canola | nucleus | 23.08 | 25.08 |
| EER99092 | Sorghum | nucleus | 29.85 | 25.0 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 29.54 | 24.94 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 29.23 | 24.61 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 31.08 | 24.57 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 30.77 | 24.51 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 28.92 | 24.35 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 30.77 | 24.04 |
| Os08t0509600-01 | Rice | nucleus | 30.77 | 23.98 |
| Zm00001d031451_P001 | Maize | nucleus | 29.54 | 23.82 |
| Os09t0491532-01 | Rice | nucleus | 23.38 | 23.53 |
| CDY69014 | Canola | nucleus | 23.08 | 23.51 |
| CDY50300 | Canola | nucleus | 23.69 | 23.48 |
| CDX96251 | Canola | nucleus | 23.69 | 23.48 |
| EES14266 | Sorghum | nucleus | 29.54 | 23.47 |
| CDX84872 | Canola | nucleus | 24.31 | 23.17 |
| CDY45826 | Canola | nucleus | 24.31 | 23.17 |
| CDX81606 | Canola | nucleus | 23.69 | 23.12 |
| CDY43604 | Canola | nucleus | 26.77 | 22.6 |
| Zm00001d052890_P001 | Maize | nucleus | 28.31 | 22.55 |
| CDY32959 | Canola | nucleus | 26.77 | 22.31 |
| CDY34028 | Canola | nucleus | 23.38 | 21.84 |
| CDX71667 | Canola | nucleus | 23.08 | 20.89 |
| CDX90071 | Canola | nucleus | 19.69 | 20.51 |
| CDY67700 | Canola | nucleus | 21.54 | 20.23 |
| CDY27612 | Canola | nucleus | 20.31 | 20.06 |
| CDY03913 | Canola | nucleus | 22.77 | 19.95 |
| CDX84928 | Canola | nucleus | 21.85 | 19.51 |
| CDY27611 | Canola | nucleus | 21.85 | 19.45 |
| CDY11816 | Canola | nucleus | 21.85 | 19.45 |
| CDX84927 | Canola | nucleus | 21.85 | 19.35 |
| CDY15713 | Canola | nucleus | 23.08 | 19.23 |
| CDY38043 | Canola | nucleus | 19.69 | 19.1 |
| CDY15712 | Canola | nucleus | 21.85 | 18.98 |
| CDY03914 | Canola | nucleus | 21.54 | 18.82 |
| CDY15132 | Canola | nucleus | 13.23 | 18.45 |
| CDY47812 | Canola | nucleus | 26.77 | 16.86 |
| CDY22356 | Canola | nucleus | 26.46 | 16.57 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.54 | 8.62 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078EBU3 | EnsemblPlants:CDX98259 | ProteinID:CDX98259 | ProteinID:CDX98259.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00105779001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EE3EB9 | SEG:seg | : | : | : | : |
Description
BnaC06g16200D
Coordinates
chrLK031904:-:86539..87798
Molecular Weight (calculated)
36468.6 Da
IEP (calculated)
9.107
GRAVY (calculated)
-0.717
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLTGCGQN QPESAGSSST TLSGGLRFGQ KIYFEDGSGA GSSKNRVKST SRKLMTARCQ VEGCRMDLSN AKTYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQATTTLL TPHYSNIAPS LYGNAIRSVL GDPTRWSTTR GSAPWQSHQL MNVFPYGNSS FTNSTDSSCA
201: LSLLSNYTNP NQQEQQPLQT PTNTWRPSSI AADRVTMAQT PPVSIQNQYL NQTWEFMSGE KSNAHYTTPV LELSQISEPV DFQISNGATM GGFELSPHQQ
301: VLRQYLEPEN TRAYDSSPQH FNWSL
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQATTTLL TPHYSNIAPS LYGNAIRSVL GDPTRWSTTR GSAPWQSHQL MNVFPYGNSS FTNSTDSSCA
201: LSLLSNYTNP NQQEQQPLQT PTNTWRPSSI AADRVTMAQT PPVSIQNQYL NQTWEFMSGE KSNAHYTTPV LELSQISEPV DFQISNGATM GGFELSPHQQ
301: VLRQYLEPEN TRAYDSSPQH FNWSL
001: MELLMCSGQA ESGGSSSTES SSLSGGLRFG QKIYFEDGSG SRSKNRVNTV RKSSTTARCQ VEGCRMDLSN VKAYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
Arabidopsis Description
SPL15Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.