Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr8P25550_001 | Banana | nucleus | 66.75 | 75.29 |
GSMUA_Achr9P27660_001 | Banana | nucleus | 61.86 | 65.04 |
GSMUA_Achr7P02020_001 | Banana | nucleus | 49.74 | 55.78 |
GSMUA_Achr4P01450_001 | Banana | nucleus | 47.68 | 51.82 |
GSMUA_Achr7P20510_001 | Banana | nucleus | 33.25 | 37.83 |
GSMUA_Achr4P03880_001 | Banana | nucleus | 26.55 | 36.14 |
GSMUA_Achr9P20220_001 | Banana | nucleus | 22.16 | 34.96 |
VIT_08s0007g06270.t01 | Wine grape | nucleus | 33.51 | 34.3 |
GSMUA_Achr9P22260_001 | Banana | nucleus | 29.9 | 33.82 |
KRG95361 | Soybean | nucleus | 30.41 | 32.87 |
KRH67040 | Soybean | nucleus | 30.93 | 32.7 |
KRH71914 | Soybean | nucleus, plastid | 29.9 | 32.4 |
PGSC0003DMT400029751 | Potato | nucleus | 30.93 | 32.26 |
Solyc10g078700.1.1 | Tomato | nucleus | 30.67 | 31.99 |
KRH38141 | Soybean | nucleus, plastid | 30.67 | 31.9 |
GSMUA_Achr6P27520_001 | Banana | plastid | 12.37 | 31.37 |
GSMUA_Achr4P23650_001 | Banana | nucleus | 14.95 | 31.02 |
CDY06881 | Canola | nucleus | 28.87 | 30.85 |
CDX98259 | Canola | nucleus | 25.77 | 30.77 |
CDX79888 | Canola | nucleus | 29.12 | 30.71 |
Bra016891.1-P | Field mustard | nucleus | 28.61 | 30.58 |
CDY53504 | Canola | nucleus | 29.12 | 30.54 |
CDY61750 | Canola | nucleus | 24.23 | 30.52 |
GSMUA_Achr1P08440_001 | Banana | nucleus | 14.69 | 30.48 |
AT2G42200.1 | Thale cress | nucleus | 29.38 | 30.4 |
CDY14818 | Canola | nucleus | 28.61 | 30.25 |
Bra004674.1-P | Field mustard | nucleus | 28.61 | 30.08 |
Bra003305.1-P | Field mustard | nucleus | 24.48 | 30.06 |
CDX67715 | Canola | nucleus | 24.23 | 29.75 |
GSMUA_Achr6P22280_001 | Banana | nucleus | 31.44 | 29.68 |
AT3G57920.1 | Thale cress | nucleus | 26.8 | 29.38 |
Bra014599.1-P | Field mustard | nucleus | 22.68 | 29.14 |
CDY47656 | Canola | nucleus | 24.23 | 29.01 |
GSMUA_Achr2P03070_001 | Banana | nucleus | 14.95 | 26.98 |
GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 19.85 | 26.46 |
GSMUA_Achr10P... | Banana | nucleus | 15.46 | 26.32 |
GSMUA_Achr3P00810_001 | Banana | nucleus | 17.27 | 26.27 |
GSMUA_Achr4P20590_001 | Banana | nucleus | 17.01 | 24.26 |
GSMUA_Achr7P05010_001 | Banana | nucleus | 16.75 | 23.72 |
GSMUA_Achr4P26940_001 | Banana | nucleus | 20.88 | 23.34 |
GSMUA_Achr4P24610_001 | Banana | nucleus | 19.59 | 23.17 |
GSMUA_Achr4P05720_001 | Banana | nucleus | 20.62 | 23.12 |
GSMUA_Achr2P11940_001 | Banana | nucleus | 18.81 | 22.96 |
GSMUA_AchrUn_... | Banana | nucleus | 20.62 | 22.86 |
GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 18.04 | 21.94 |
GSMUA_Achr9P01380_001 | Banana | nucleus | 20.62 | 21.45 |
GSMUA_Achr4P12470_001 | Banana | nucleus | 19.33 | 21.43 |
GSMUA_AchrUn_... | Banana | nucleus | 19.33 | 21.25 |
GSMUA_Achr6P06030_001 | Banana | nucleus | 20.1 | 21.14 |
GSMUA_Achr2P06150_001 | Banana | nucleus | 21.39 | 21.12 |
GSMUA_Achr7P08750_001 | Banana | nucleus | 19.07 | 20.9 |
GSMUA_Achr9P23140_001 | Banana | nucleus | 22.16 | 20.67 |
GSMUA_AchrUn_... | Banana | nucleus | 19.59 | 20.43 |
GSMUA_Achr9P29330_001 | Banana | nucleus | 19.85 | 20.16 |
GSMUA_Achr4P16050_001 | Banana | nucleus | 18.3 | 19.72 |
GSMUA_Achr9P14160_001 | Banana | nucleus | 23.2 | 19.65 |
GSMUA_Achr5P25090_001 | Banana | nucleus | 20.88 | 19.61 |
GSMUA_Achr3P05360_001 | Banana | nucleus | 23.2 | 19.4 |
GSMUA_Achr3P27750_001 | Banana | nucleus | 22.42 | 18.55 |
GSMUA_Achr5P21990_001 | Banana | nucleus | 20.62 | 18.48 |
GSMUA_Achr11P... | Banana | nucleus | 19.33 | 18.07 |
GSMUA_Achr10P... | Banana | nucleus | 23.2 | 17.86 |
GSMUA_Achr5P22630_001 | Banana | nucleus | 20.62 | 17.62 |
GSMUA_Achr6P36010_001 | Banana | nucleus | 19.85 | 17.58 |
GSMUA_Achr10P... | Banana | nucleus | 21.39 | 17.04 |
GSMUA_Achr8P23820_001 | Banana | nucleus | 21.39 | 15.75 |
Protein Annotations
MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G11170_001 |
EnsemblPlants:GSMUA_Achr3P11170_001 | EnsemblPlants:GSMUA_Achr3T11170_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0SDN4 | PFAM:PF03110 |
PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF67 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
UniParc:UPI000294CF41 | SEG:seg | : | : | : | : |
Description
Putative Squamosa promoter-binding-like protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr3G11170_001]
Coordinates
chr3:-:8298876..8306545
Molecular Weight (calculated)
41310.1 Da
IEP (calculated)
9.041
GRAVY (calculated)
-0.522
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSLKASG ALSGASDALH GLKFGQKIYF DDGGGGGQQP PRCQVEGCNV DLTGVKAYYC RHKVCGMHSK APKVVVAGLE QRFCQQFHQL SEFDQGKRSC
101: RRRLAGHNER RRKPPPGPFA SRYGRLASSV HEDPSRFRSF LMDFSYPYLS STARNLWPTA RAGDRVASNE WHVAFDTSPG AAAMHGTHAC YQGPPAATFC
201: SPMEFPPGEC LGGVSDSSCA LSLLSTHPWS SNSARNRAPA IAPSSSTFDG PPMAQSAVPD NYGTSSWGLR GHGSRTSSHE IQHAAGLAGA TEASDAHFSG
301: QVELALQENG QCLDHGSARS YGHSSLGMHW SLRTSRKREP PTSGGVFTSC GNKSLRVASP TPSPGGRRFV SGVNQGLLAS VHLYHGSS
101: RRRLAGHNER RRKPPPGPFA SRYGRLASSV HEDPSRFRSF LMDFSYPYLS STARNLWPTA RAGDRVASNE WHVAFDTSPG AAAMHGTHAC YQGPPAATFC
201: SPMEFPPGEC LGGVSDSSCA LSLLSTHPWS SNSARNRAPA IAPSSSTFDG PPMAQSAVPD NYGTSSWGLR GHGSRTSSHE IQHAAGLAGA TEASDAHFSG
301: QVELALQENG QCLDHGSARS YGHSSLGMHW SLRTSRKREP PTSGGVFTSC GNKSLRVASP TPSPGGRRFV SGVNQGLLAS VHLYHGSS
001: MELLMCSGQA ESGGSSSTES SSLSGGLRFG QKIYFEDGSG SRSKNRVNTV RKSSTTARCQ VEGCRMDLSN VKAYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
Arabidopsis Description
SPL15Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.