Factsheet for GSMUA_Achr4P03880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22260_001	Banana	nucleus	62.11	51.6
GSMUA_Achr7P20510_001	Banana	nucleus	48.42	40.47
VIT_08s0007g06270.t01	Wine grape	nucleus	51.23	38.52
KRG95361	Soybean	nucleus	47.37	37.6
KRH67040	Soybean	nucleus	47.02	36.51
PGSC0003DMT400029751	Potato	nucleus	46.32	35.48
GSMUA_Achr1P08440_001	Banana	nucleus	23.16	35.29
Solyc10g078700.1.1	Tomato	nucleus	45.96	35.22
KRH38141	Soybean	nucleus, plastid	45.61	34.85
GSMUA_Achr4P23650_001	Banana	nucleus	22.81	34.76
KRH71914	Soybean	nucleus, plastid	42.46	33.8
GSMUA_Achr6P27520_001	Banana	plastid	17.54	32.68
CDY61750	Canola	nucleus	34.74	32.14
GSMUA_Achr8P25550_001	Banana	nucleus	37.89	31.4
GSMUA_Achr7P02020_001	Banana	nucleus	37.89	31.21
GSMUA_Achr6P22280_001	Banana	nucleus	44.21	30.66
Bra014599.1-P	Field mustard	nucleus	31.93	30.13
GSMUA_Achr9P20220_001	Banana	nucleus	25.96	30.08
CDY06881	Canola	nucleus	38.25	30.03
CDX79888	Canola	nucleus	38.6	29.89
AT2G42200.1	Thale cress	nucleus	39.3	29.87
CDX98259	Canola	nucleus	34.04	29.85
Bra016891.1-P	Field mustard	nucleus	37.89	29.75
GSMUA_Achr4P01450_001	Banana	nucleus	37.19	29.69
CDY47656	Canola	nucleus	33.68	29.63
CDY14818	Canola	nucleus	37.89	29.43
GSMUA_Achr2P03070_001	Banana	nucleus	22.11	29.3
CDY53504	Canola	nucleus	37.89	29.19
Bra004674.1-P	Field mustard	nucleus	37.54	29.0
AT3G57920.1	Thale cress	nucleus	35.79	28.81
Bra003305.1-P	Field mustard	nucleus	31.93	28.8
GSMUA_Achr9P27660_001	Banana	nucleus	37.19	28.73
CDX67715	Canola	nucleus	31.23	28.16
GSMUA_Achr10P...	Banana	nucleus	22.46	28.07
GSMUA_Achr3P00810_001	Banana	nucleus	23.86	26.67
GSMUA_Achr3P11170_001	Banana	nucleus	36.14	26.55
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	24.56	24.05
GSMUA_Achr7P05010_001	Banana	nucleus	22.46	23.36
GSMUA_Achr4P20590_001	Banana	nucleus	21.75	22.79
GSMUA_Achr2P11940_001	Banana	nucleus	24.56	22.01
GSMUA_AchrUn_...	Banana	nucleus	26.67	21.71
GSMUA_Achr4P12470_001	Banana	nucleus	26.32	21.43
GSMUA_Achr4P05720_001	Banana	nucleus	25.96	21.39
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	23.51	21.0
GSMUA_Achr9P01380_001	Banana	nucleus	27.37	20.91
GSMUA_Achr6P06030_001	Banana	nucleus	27.02	20.87
GSMUA_Achr4P26940_001	Banana	nucleus	25.26	20.75
GSMUA_Achr9P23140_001	Banana	nucleus	30.18	20.67
GSMUA_Achr9P14160_001	Banana	nucleus	32.98	20.52
GSMUA_Achr4P24610_001	Banana	nucleus	23.51	20.43
GSMUA_AchrUn_...	Banana	nucleus	25.26	20.4
GSMUA_Achr5P21990_001	Banana	nucleus	30.88	20.32
GSMUA_AchrUn_...	Banana	nucleus	25.96	19.89
GSMUA_Achr2P06150_001	Banana	nucleus	27.37	19.85
GSMUA_Achr3P05360_001	Banana	nucleus	32.28	19.83
GSMUA_Achr7P08750_001	Banana	nucleus	24.56	19.77
GSMUA_Achr10P...	Banana	nucleus	34.39	19.44
GSMUA_Achr9P29330_001	Banana	nucleus	25.61	19.11
GSMUA_Achr5P22630_001	Banana	nucleus	30.18	18.94
GSMUA_Achr6P36010_001	Banana	nucleus	28.77	18.72
GSMUA_Achr4P16050_001	Banana	nucleus	23.51	18.61
GSMUA_Achr5P25090_001	Banana	nucleus	26.67	18.4
GSMUA_Achr3P27750_001	Banana	nucleus	30.18	18.34
GSMUA_Achr11P...	Banana	nucleus	26.67	18.31
GSMUA_Achr10P...	Banana	nucleus	30.88	18.07
GSMUA_Achr8P23820_001	Banana	nucleus	32.28	17.46

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G03880_001
EnsemblPlants:GSMUA_Achr4P03880_001	EnsemblPlants:GSMUA_Achr4T03880_001	InterPro:IPR004333	InterPro:IPR036893	UniProt:M0SKV5	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF56	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI000294C78A	SEG:seg	:	:	:	:

Description

Putative Squamosa promoter-binding-like protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03880_001]

Coordinates

chr4:+:3166218..3167363

Molecular Weight (calculated)

31153.9 Da

IEP (calculated)

9.182

GRAVY (calculated)

-0.465

Length

285 amino acids

Sequence
(BLAST)

001: MNPNCSNVAS SACGSSDSTQ GLKIGRKTYF EDFSVSSSSF PVALSAPQKK GKGVAQVGKQ QQPPRCQVEG CSVDLTGAKA YHCRHKVCGV HSKSPKVLVA
101: GMEQRFCQQC SRFHQLPEFD QGKRSCRRRL ACHNERRRRR PLSAHVACMP SVFHAEGNNR FRGFLVDFTH PKLPSFLQNA WQINQSGLGV ASAPGIPHLT
201: AGSDSSRALS LLSAQPWGST LVADYMTSSR GCSTSFEVRL NQVGEPDDGH FAGEIELVPQ GKRQCMGVDP SVRCRFSDDA IHWTL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.