Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05720_001 | Banana | nucleus | 74.29 | 75.14 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 72.0 | 60.58 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 76.57 | 57.14 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 50.86 | 38.86 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 48.57 | 37.44 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 46.86 | 37.44 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 48.86 | 36.85 |
| GSMUA_Achr10P... | Banana | nucleus | 51.43 | 35.71 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 43.43 | 35.1 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 45.71 | 34.41 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 46.86 | 34.38 |
| Solyc04g045560.2.1 | Tomato | nucleus | 34.0 | 34.0 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 14.86 | 33.99 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 17.14 | 32.09 |
| PGSC0003DMT400068752 | Potato | nucleus | 35.14 | 31.95 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 16.86 | 31.55 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 46.29 | 30.74 |
| Solyc05g015510.2.1 | Tomato | nucleus | 40.57 | 30.67 |
| GSMUA_Achr10P... | Banana | nucleus | 42.57 | 30.6 |
| PGSC0003DMT400084734 | Potato | nucleus | 40.57 | 30.54 |
| KRG97402 | Soybean | nucleus | 37.71 | 30.48 |
| Bra033671.1-P | Field mustard | nucleus | 31.14 | 30.11 |
| KRH31506 | Soybean | nucleus | 37.14 | 29.35 |
| CDX84928 | Canola | nucleus | 30.29 | 29.12 |
| Bra032822.1-P | Field mustard | nucleus | 30.29 | 29.04 |
| CDY27611 | Canola | nucleus | 30.29 | 29.04 |
| CDY43604 | Canola | nucleus | 31.71 | 28.83 |
| CDY03913 | Canola | nucleus | 30.0 | 28.3 |
| CDY32959 | Canola | nucleus | 31.14 | 27.95 |
| Bra030040.1-P | Field mustard | nucleus | 31.14 | 27.95 |
| Bra027478.1-P | Field mustard | nucleus | 31.14 | 27.95 |
| CDY15713 | Canola | nucleus | 31.14 | 27.95 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 16.86 | 27.44 |
| Bra032823.1-P | Field mustard | nucleus | 25.71 | 27.44 |
| CDY27612 | Canola | nucleus | 25.71 | 27.36 |
| CDX84927 | Canola | nucleus | 28.57 | 27.25 |
| AT5G43270.1 | Thale cress | nucleus | 32.0 | 26.73 |
| CDY67700 | Canola | nucleus | 26.29 | 26.59 |
| CDY11816 | Canola | nucleus | 27.71 | 26.58 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 21.43 | 26.32 |
| AT1G27370.1 | Thale cress | nucleus | 29.71 | 26.26 |
| Bra030041.1-P | Field mustard | nucleus | 28.0 | 26.2 |
| CDY03914 | Canola | nucleus | 27.71 | 26.08 |
| Bra010949.1-P | Field mustard | nucleus | 27.14 | 25.96 |
| CDY15712 | Canola | nucleus | 27.43 | 25.67 |
| AT1G27360.1 | Thale cress | nucleus | 28.0 | 24.94 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 23.71 | 24.13 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 17.43 | 23.92 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 19.71 | 23.71 |
| CDY22356 | Canola | nucleus | 35.14 | 23.7 |
| CDY47812 | Canola | nucleus | 34.57 | 23.45 |
| GSMUA_Achr10P... | Banana | nucleus | 15.14 | 23.25 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 18.0 | 23.16 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 22.86 | 23.12 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 21.71 | 22.29 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 23.14 | 21.95 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 20.0 | 21.94 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 17.14 | 21.9 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 21.43 | 21.87 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 19.43 | 21.38 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 14.86 | 21.14 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 21.71 | 21.11 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 21.43 | 21.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.86 | 20.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.71 | 20.43 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 21.43 | 20.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.29 | 20.11 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 18.57 | 19.82 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 19.43 | 19.6 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 21.43 | 19.33 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 19.43 | 19.21 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 22.29 | 18.89 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 21.14 | 18.83 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 20.0 | 18.77 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 22.0 | 18.73 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 20.29 | 18.59 |
| GSMUA_Achr11P... | Banana | nucleus | 20.29 | 17.11 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr4G12470_001 |
| EnsemblPlants:GSMUA_Achr4P12470_001 | EnsemblPlants:GSMUA_Achr4T12470_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0SNB2 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF24 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI000296F221 | SEG:seg | : | : | : | : |
Description
Putative uncharacterized protein Sb04g004940 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12470_001]
Coordinates
chr4:+:9238235..9247673
Molecular Weight (calculated)
39284.1 Da
IEP (calculated)
8.936
GRAVY (calculated)
-0.660
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHCFMLFEF SAWAMDWNAN ASLLWDWDNH APFGGNFKLS GGGGASSGSE LGTGSSSKST ISASVDSSAQ SSCCQVEGCN IDLSGAKDYH RKHRVCETHS
101: KCPKVTVAGQ ERRFCQQCSR FHDLSEFDQR KRSCRRRLSD HNARRRKPRP NIISFSSTTF PPLLYDNKHQ MNYLWNNAPF GHMKPMASSK SEGSQTFKLT
201: QIKAPWMKST KEVSIDGQLH LPNTQLSNGF PALYHDVDKL LPLKGTATEV LNQGSEASAG ASNLDRAPDL RRALSLLSTS SWASPDPRQT PPVTEFVDAN
301: SSNHWIYGQP LAQQAQLLPF IMRRYDNQPQ EFQLQKIPYR DAIFDPSQIY
101: KCPKVTVAGQ ERRFCQQCSR FHDLSEFDQR KRSCRRRLSD HNARRRKPRP NIISFSSTTF PPLLYDNKHQ MNYLWNNAPF GHMKPMASSK SEGSQTFKLT
201: QIKAPWMKST KEVSIDGQLH LPNTQLSNGF PALYHDVDKL LPLKGTATEV LNQGSEASAG ASNLDRAPDL RRALSLLSTS SWASPDPRQT PPVTEFVDAN
301: SSNHWIYGQP LAQQAQLLPF IMRRYDNQPQ EFQLQKIPYR DAIFDPSQIY
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
Arabidopsis Description
SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.