Factsheet for GSMUA_Achr5P13440_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26940_001	Banana	nucleus	56.7	47.55
KRG88952	Soybean	nucleus	30.24	39.29
TraesCS2A01G413900.1	Wheat	nucleus	44.33	36.96
TraesCS2D01G410700.1	Wheat	nucleus	44.67	36.62
GSMUA_Achr6P27520_001	Banana	plastid	19.24	36.6
TraesCS2B01G432700.1	Wheat	nucleus	44.33	36.54
HORVU2Hr1G097610.1	Barley	nucleus	25.43	36.45
Os04t0551500-01	Rice	nucleus	44.33	35.83
HORVU2Hr1G097580.1	Barley	nucleus	25.43	35.41
GSMUA_Achr4P23650_001	Banana	nucleus	21.65	33.69
Zm00001d026175_P001	Maize	nucleus	45.7	33.33
GSMUA_Achr1P08440_001	Banana	nucleus	21.31	33.16
EES11232	Sorghum	nucleus	46.39	32.3
GSMUA_Achr2P03070_001	Banana	nucleus	21.65	29.3
VIT_15s0021g02290.t01	Wine grape	nucleus	38.14	27.82
KRH48746	Soybean	nucleus	30.58	26.02
GSMUA_Achr10P...	Banana	nucleus	20.27	25.88
KRH75287	Soybean	nucleus	30.58	25.87
KRH66613	Soybean	nucleus	29.21	24.85
GSMUA_Achr4P03880_001	Banana	nucleus	24.05	24.56
GSMUA_Achr3P00810_001	Banana	nucleus	20.96	23.92
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	25.77	23.51
GSMUA_Achr8P25550_001	Banana	nucleus	26.46	22.38
GSMUA_Achr7P02020_001	Banana	nucleus	26.46	22.25
GSMUA_Achr7P20510_001	Banana	nucleus	25.77	21.99
GSMUA_Achr7P05010_001	Banana	nucleus	20.62	21.9
GSMUA_Achr4P20590_001	Banana	nucleus	20.27	21.69
GSMUA_AchrUn_...	Banana	nucleus	25.77	21.43
GSMUA_Achr4P01450_001	Banana	nucleus	26.12	21.29
GSMUA_Achr4P16050_001	Banana	nucleus	25.43	20.56
GSMUA_Achr4P05720_001	Banana	nucleus	23.71	19.94
GSMUA_Achr3P11170_001	Banana	nucleus	26.46	19.85
GSMUA_Achr9P27660_001	Banana	nucleus	25.09	19.78
GSMUA_Achr4P12470_001	Banana	nucleus	23.71	19.71
GSMUA_AchrUn_...	Banana	nucleus	23.71	19.55
GSMUA_Achr9P22260_001	Banana	nucleus	23.02	19.53
GSMUA_Achr6P06030_001	Banana	nucleus	24.74	19.51
GSMUA_AchrUn_...	Banana	nucleus	24.74	19.35
GSMUA_Achr9P01380_001	Banana	nucleus	24.4	19.03
GSMUA_Achr2P11940_001	Banana	nucleus	20.62	18.87
GSMUA_Achr2P06150_001	Banana	nucleus	25.09	18.58
GSMUA_Achr9P29330_001	Banana	nucleus	24.05	18.32
GSMUA_Achr4P24610_001	Banana	nucleus	20.62	18.29
GSMUA_Achr7P08750_001	Banana	nucleus	21.65	17.8
GSMUA_Achr6P22280_001	Banana	nucleus	25.09	17.76
GSMUA_Achr5P25090_001	Banana	nucleus	24.74	17.43
GSMUA_Achr11P...	Banana	nucleus	24.74	17.35
GSMUA_Achr9P23140_001	Banana	nucleus	24.05	16.83
GSMUA_Achr5P21990_001	Banana	nucleus	23.37	15.7
GSMUA_Achr3P27750_001	Banana	nucleus	25.09	15.56
GSMUA_Achr9P20220_001	Banana	nucleus	12.71	15.04
GSMUA_Achr6P36010_001	Banana	nucleus	22.34	14.84
GSMUA_Achr3P05360_001	Banana	nucleus	23.37	14.66
GSMUA_Achr9P14160_001	Banana	nucleus	22.68	14.41
GSMUA_Achr5P22630_001	Banana	nucleus	22.34	14.32
GSMUA_Achr10P...	Banana	nucleus	24.74	14.29
GSMUA_Achr10P...	Banana	nucleus	21.31	12.73
GSMUA_Achr8P23820_001	Banana	nucleus	21.65	11.95

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G13440_001
EnsemblPlants:GSMUA_Achr5P13440_001	EnsemblPlants:GSMUA_Achr5T13440_001	InterPro:IPR004333	InterPro:IPR036893	UniProt:M0SY73	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF15	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI000295F112	SEG:seg	:	:	:	:

Description

Putative OsSPL7 - SBP-box gene family member, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G13440_001]

Coordinates

chr5:+:9644702..9648653

Molecular Weight (calculated)

31825.9 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.413

Length

291 amino acids

Sequence
(BLAST)

001: MDASRGAAFV RTPRSMNLLV GYAETVAVSG QLRVPPVEGR PASVLRKGTA PRCQVDGCSK VLVDEKEYHK RHKVCELHSK APRVVVLGVE QRFCQQCSRS
101: FHVISEFDDS KRSCRRRLAG HNERRRKNSS EPITRNPALG SAIIGGMAPY LSASPGCALS LLSSKASPWI ATSDFSSRSS AALNELIAEN RAAVLARQLL
201: ADGSGWHAMV SVKQQQPPVF WSHIQHQATP QPMPPHADGW SRLQGAGGHV TLDLMQMPDS FEIVSGRRSK SKEDDEESSE IWKSLAGTHV V

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.