Factsheet for TraesCS2A01G413900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G410700.1	Wheat	nucleus	96.56	94.93
TraesCS2B01G432700.1	Wheat	nucleus	93.7	92.63
HORVU2Hr1G097580.1	Barley	nucleus	51.58	86.12
HORVU2Hr1G097610.1	Barley	nucleus	48.42	83.25
Os04t0551500-01	Rice	nucleus	59.89	58.06
EES11232	Sorghum	nucleus	62.18	51.91
Zm00001d026175_P001	Maize	nucleus	55.87	48.87
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	36.96	44.33
KRG88952	Soybean	nucleus	26.93	41.96
GSMUA_Achr4P26940_001	Banana	nucleus	40.11	40.35
TraesCS2A01G232400.1	Wheat	nucleus	19.48	35.42
KRH75287	Soybean	nucleus	29.8	30.23
KRH66613	Soybean	nucleus	28.94	29.53
VIT_15s0021g02290.t01	Wine grape	nucleus	33.52	29.32
KRH48746	Soybean	nucleus	27.79	28.36
TraesCS6A01G155300.1	Wheat	nucleus	22.92	24.39
TraesCS7A01G246500.1	Wheat	nucleus	25.5	23.06
TraesCS3A01G432500.1	Wheat	nucleus	25.79	21.69
TraesCS5A01G265900.2	Wheat	nucleus	25.5	21.65
TraesCS7A01G260500.1	Wheat	nucleus	23.78	20.39
TraesCS7A01G494900.1	Wheat	nucleus	22.06	19.54
TraesCS5A01G286700.2	Wheat	nucleus	24.36	19.5
TraesCS7A01G495000.1	Wheat	nucleus	22.64	19.46
TraesCS2A01G502300.1	Wheat	nucleus	22.92	19.42
TraesCS7A01G494800.1	Wheat	nucleus	21.78	19.05
TraesCS7A01G495100.1	Wheat	nucleus	22.64	18.85
TraesCS6A01G152000.1	Wheat	nucleus	22.92	17.86
TraesCS6A01G110100.2	Wheat	nucleus	23.5	17.26

Protein Annotations

EnsemblPlants:TraesCS2A01G413900.1	EnsemblPlantsGene:TraesCS2A01G413900	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR004333
InterPro:IPR036893	InterPro:SBP_dom	InterPro:SBP_sf	PANTHER:PTHR31251	PANTHER:PTHR31251:SF15	PFAM:PF03110
PFscan:PS51141	SEG:seg	SUPFAM:SSF103612	MapMan:15.5.18	:	:

Description

No Description!

Coordinates

chr2A:-:670957599..670962492

Molecular Weight (calculated)

36411.0 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.383

Length

349 amino acids

Sequence
(BLAST)

001: MEGDGDARSR ATLAWDLGVQ WAPAASAAYP QHFLPPPGVA SQQQQHMQQE LTSLKLGKRP CSLPGGQVAV AQVDGSGGGG GRAAVEGKRK EKAAGAAATA
101: AMPRCQVEGC HMALAGAKEY HRRHKVCEAH SKAPRVIVHG AEQRFCQQCS RFHAMAEFDD AKRSCRRRLA GHNERRRKSN ASDAMARGSA HAHGVASLVH
201: GFAPYVGLPT SPAGALSLLS SARAAPWLVP TTPGDAFSAR SSSAALDELI AENRAALLAC HFFPQRSAAR PAAAEMAPAW HQAHQQAPPG HDQGAPLPAG
301: AGHVTLDLMQ APGTAGLPFR PMAQGRPAED GDAGRSSGVW TPLQGAHAV

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.