Factsheet for TraesCS2B01G432700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G410700.1	Wheat	nucleus	96.03	95.49
TraesCS2A01G413900.1	Wheat	nucleus	92.63	93.7
HORVU2Hr1G097580.1	Barley	nucleus	50.42	85.17
HORVU2Hr1G097610.1	Barley	nucleus	47.59	82.76
Os04t0551500-01	Rice	nucleus	58.07	56.94
EES11232	Sorghum	nucleus	60.06	50.72
Zm00001d026175_P001	Maize	nucleus	55.24	48.87
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	36.54	44.33
GSMUA_Achr4P26940_001	Banana	nucleus	39.94	40.63
KRG88952	Soybean	nucleus	25.78	40.62
TraesCS2B01G250900.1	Wheat	nucleus	18.98	34.9
KRH75287	Soybean	nucleus	28.9	29.65
VIT_15s0021g02290.t01	Wine grape	nucleus	33.14	29.32
KRH66613	Soybean	nucleus	27.48	28.36
KRH48746	Soybean	nucleus	26.63	27.49
TraesCS6B01G183400.1	Wheat	nucleus	22.1	23.85
TraesCS7B01G144900.1	Wheat	nucleus	25.21	23.06
TraesCS5B01G265600.2	Wheat	nucleus	25.21	22.47
TraesCS3B01G468400.1	Wheat	nucleus	26.06	22.22
TraesCS7B01G402300.1	Wheat	nucleus	22.95	20.77
TraesCS7B01G158500.1	Wheat	nucleus	23.8	20.54
TraesCS2B01G530400.1	Wheat	nucleus	22.66	19.61
TraesCS5B01G286000.1	Wheat	nucleus	23.8	19.4
TraesCS7B01G402200.1	Wheat	nucleus	22.38	18.94
TraesCS7B01G402400.1	Wheat	nucleus	21.25	18.7
TraesCS6B01G138400.1	Wheat	nucleus	23.51	17.55
TraesCS6B01G180300.1	Wheat	nucleus	21.25	16.97

Protein Annotations

EnsemblPlants:TraesCS2B01G432700.1	EnsemblPlantsGene:TraesCS2B01G432700	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR004333
InterPro:IPR036893	InterPro:SBP_dom	InterPro:SBP_sf	PANTHER:PTHR31251	PANTHER:PTHR31251:SF15	PFAM:PF03110
PFscan:PS51141	SEG:seg	SUPFAM:SSF103612	MapMan:15.5.18	:	:

Description

No Description!

Coordinates

chr2B:-:621960663..621968513

Molecular Weight (calculated)

36887.7 Da

IEP (calculated)

10.256

GRAVY (calculated)

-0.388

Length

353 amino acids

Sequence
(BLAST)

001: MEGDGNARSR ATLAWDLGVQ WAPAASAAYP QHFLPPPGVA SQQQHMQQEL TSLKLGKRPS NLAGGQVAQM DGSGVGGGRA VVEGKRKEKA AGATATAAMP
101: RCQVEGCHMV LAGAKEYHRR HKVCEAHSKA PRVIVHGAEQ RFCQQCSRFH AMAEFDDAKR SCRRRLAGHN ERRRKSNASD AMARGSAHAH GVASLVHGFV
201: PYGGLPTSPA GALSLLSSAR AAPWLVPTTP GDVFSARSSS AALDELIAEN RAALLACHFF PQRSAGRPAA AEMAPAWHQA HQQAPPGHAV VGNGAGRDHG
301: APPPAGHVTL DLMQAPATAG LPFRPMAQGR PAEDGDAGRG SGVWTPLQGA HAV

Best Arabidopsis Sequence Match ( AT1G27370.6 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.