Factsheet for Os04t0551500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G413900.1	Wheat	nucleus	58.06	59.89
TraesCS2D01G410700.1	Wheat	nucleus	58.33	59.15
TraesCS2B01G432700.1	Wheat	nucleus	56.94	58.07
HORVU2Hr1G097580.1	Barley	nucleus	33.06	56.94
HORVU2Hr1G097610.1	Barley	nucleus	31.67	56.16
EES11232	Sorghum	nucleus	61.67	53.11
Zm00001d026175_P001	Maize	nucleus	57.22	51.63
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	35.83	44.33
KRG88952	Soybean	nucleus	25.0	40.18
GSMUA_Achr4P26940_001	Banana	nucleus	36.39	37.75
Os07t0505200-01	Rice	nucleus	17.5	29.17
KRH75287	Soybean	nucleus	26.67	27.91
VIT_15s0021g02290.t01	Wine grape	nucleus	30.83	27.82
KRH66613	Soybean	nucleus	26.39	27.78
KRH48746	Soybean	nucleus	26.11	27.49
Os02t0174100-02	Rice	nucleus	16.94	24.3
Os02t0139400-01	Rice	nucleus	18.06	23.05
Os09t0491532-01	Rice	nucleus	20.28	22.6
Os08t0509600-01	Rice	nucleus	24.44	21.1
Os06t0663500-00	Rice	nucleus	19.44	20.41
Os04t0656500-01	Rice	nucleus	22.22	19.23
Os06t0659100-00	Rice	nucleus	22.22	18.78
Os01t0922600-01	Rice	nucleus	16.11	18.65
Os08t0531600-01	Rice	nucleus	23.06	18.24
Os02t0177300-00	Rice	nucleus	22.22	17.09
Os09t0507100-00	Rice	nucleus	21.94	16.74
Os06t0703500-02	Rice	nucleus	21.39	16.21

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:4336597	EMBL:AK068749	ProteinID:BAF15411.1	ProteinID:BAS90384.1
ProteinID:CAD41588.1	ProteinID:CAE01683.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	EnsemblPlantsGene:Os04g0551500	EnsemblPlants:Os04t0551500-01	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF15	UniProt:Q7XT42	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI00001B0D2E	RefSeq:XP_015635344.1	SEG:seg	:	:	:

Description

RICE SQUAMOSA PROMOTER-BINDING-LIKE 7SBP domain containing protein. (Os04t0551500-01)

Coordinates

chr4:+:27614776..27618001

Molecular Weight (calculated)

37389.2 Da

IEP (calculated)

9.540

GRAVY (calculated)

-0.534

Length

360 amino acids

Sequence
(BLAST)

001: MEGNGCGGSG ATPRGVVGMH WAPVVTSPPS PQPPFLPPAP CRPDVQMQQQ GGLTCLKLGK RPCFWGGDGA GQVAQGSGGG GGGGGGGSAD QGKRKEKAAT
101: AVPVVPRCQV EGCDITLQGV KEYHRRHKVC EVHAKAPRVV VHGTEQRFCQ QCSRFHVLAE FDDAKKSCRR RLAGHNERRR RSNASEAMAR GSAHPHGMPV
201: LGHGFPPYGL PTSSAGALSL LSSARATGPW LMPTPDISAR SSAALDELIA ENRAALLSWQ FFSDRQPPPA GRPTGRSPGS ETAGGWHAHL QARPPPPGAG
301: GQHENQSGHV TLDLMQATTA AGGSGAPFRP VPARPPKEGG DAGCTSDAWT PSPMEGARVV

Best Arabidopsis Sequence Match ( AT1G27370.6 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.