Factsheet for VIT_15s0021g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88952	Soybean	nucleus	38.6	68.75
KRH75287	Soybean	nucleus	50.88	59.01
KRH48746	Soybean	nucleus	42.86	50.0
KRH66613	Soybean	nucleus	42.86	50.0
VIT_10s0003g00050.t01	Wine grape	nucleus	15.29	43.57
HORVU2Hr1G097610.1	Barley	nucleus	20.8	40.89
HORVU2Hr1G097580.1	Barley	nucleus	20.8	39.71
VIT_12s0028g03350.t01	Wine grape	nucleus	16.54	39.05
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	27.82	38.14
VIT_19s0014g02350.t01	Wine grape	nucleus	17.29	33.82
TraesCS2A01G413900.1	Wheat	nucleus	29.32	33.52
TraesCS2B01G432700.1	Wheat	nucleus	29.32	33.14
GSMUA_Achr4P26940_001	Banana	nucleus	28.82	33.14
TraesCS2D01G410700.1	Wheat	nucleus	29.32	32.96
Os04t0551500-01	Rice	nucleus	27.82	30.83
Zm00001d026175_P001	Maize	nucleus	30.08	30.08
VIT_04s0210g00170.t01	Wine grape	nucleus	15.29	29.47
EES11232	Sorghum	nucleus	30.83	29.43
VIT_15s0021g02300.t01	Wine grape	nucleus	19.3	25.33
VIT_08s0007g06270.t01	Wine grape	nucleus	22.56	23.75
VIT_01s0010g03910.t01	Wine grape	nucleus	20.8	21.34
VIT_17s0000g01260.t01	Wine grape	nucleus	20.8	20.7
VIT_14s0068g01780.t01	Wine grape	nucleus	19.05	20.11
VIT_17s0000g05020.t01	Wine grape	nucleus	27.82	19.93
VIT_01s0010g03710.t01	Wine grape	nucleus	23.31	19.5
VIT_11s0065g00170.t01	Wine grape	nucleus	22.56	19.35
VIT_01s0011g00130.t01	Wine grape	nucleus	19.8	15.58

Protein Annotations

EntrezGene:100246212	wikigene:100246212	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CCB43857	ProteinID:CCB43857.1
UniProt:F6GV74	EMBL:FN594952	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100246212	wikigene:LOC100246212	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF15	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0002109CE8	ArrayExpress:VIT_15s0021g02290
EnsemblPlantsGene:VIT_15s0021g02290	EnsemblPlants:VIT_15s0021g02290.t01	RefSeq:XP_002274502	RefSeq:XP_002274502.2	RefSeq:XP_010661347.1	SEG:seg

Description

No Description!

Coordinates

chr15:+:13245041..13249253

Molecular Weight (calculated)

44269.2 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.773

Length

399 amino acids

Sequence
(BLAST)

001: MENGGNSFNG NRGQNGNSGS HLAWDVRDLG ASRFDWNCTG NSFNDDAATA TATDAPTQPE AGVGHALMFP HQATADVHHN QYYHQHNHHH HHQQSLYGGD
101: GSHLHPDPHL MCLKLGKRHY FEDSTPGIST DKRGRPYYSG GSSQSSATAV SVVGSPATVP RCQVEGCHVA LVNAKDYHRR HKVCEMHSKA PKVVVLGLEQ
201: RFCQQCSRFH AVSEFDDSKR SCRRRLAGHN ERRRKSSHDS VARNPSQAAN KLMTGRFAYL SSPTGRALSL LSSKSDSWVS SAELSLRSSA ALRELIAENR
301: AAILARQLIL DRDWHWHHHG MEDSGGEQPG SDSLMPHQHQ MFPGSRSWER FHEANGHVTL DLMQAPSSAF GLLSVREKSK EEEEECSELW NSLEGTHVV

Best Arabidopsis Sequence Match ( AT1G27370.6 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.