Factsheet for VIT_01s0011g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00050.t01	Wine grape	nucleus	11.05	40.0
CDX95958	Canola	nucleus	19.53	33.11
Bra004363.1-P	Field mustard	nucleus	19.53	32.89
VIT_12s0028g03350.t01	Wine grape	nucleus	10.85	32.54
CDY69014	Canola	nucleus	19.33	30.72
CDX96251	Canola	nucleus	19.53	30.18
Bra038324.1-P	Field mustard	nucleus	19.33	30.06
CDX81606	Canola	nucleus	19.72	30.03
CDY50300	Canola	nucleus	19.33	29.88
VIT_19s0014g02350.t01	Wine grape	nucleus	11.24	27.94
VIT_04s0210g00170.t01	Wine grape	nucleus	11.05	27.05
VIT_15s0021g02300.t01	Wine grape	nucleus	14.79	24.67
AT1G69170.1	Thale cress	nucleus	19.53	24.44
KRH70968	Soybean	nucleus	22.88	24.07
KRH75117	Soybean	nucleus	22.68	23.81
VIT_17s0000g05020.t01	Wine grape	nucleus	25.05	22.8
VIT_08s0007g06270.t01	Wine grape	nucleus	16.37	21.9
VIT_01s0010g03910.t01	Wine grape	nucleus	15.78	20.57
VIT_17s0000g01260.t01	Wine grape	nucleus	15.78	19.95
VIT_15s0021g02290.t01	Wine grape	nucleus	15.58	19.8
Solyc05g012040.2.1	Tomato	nucleus	21.7	19.71
VIT_14s0068g01780.t01	Wine grape	nucleus	14.6	19.58
PGSC0003DMT400072745	Potato	nucleus	21.5	19.53
VIT_11s0065g00170.t01	Wine grape	nucleus	15.98	17.42
VIT_01s0010g03710.t01	Wine grape	nucleus	15.78	16.77

Protein Annotations

EntrezGene:100245772	wikigene:100245772	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CCB51091	ProteinID:CCB51091.1
UniProt:F6HEZ9	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100245772	wikigene:LOC100245772	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF16	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0001982998	ArrayExpress:VIT_01s0011g00130
EnsemblPlantsGene:VIT_01s0011g00130	EnsemblPlants:VIT_01s0011g00130.t01	RefSeq:XP_002273534	RefSeq:XP_002273534.2	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:231616..236216

Molecular Weight (calculated)

56025.3 Da

IEP (calculated)

8.285

GRAVY (calculated)

-0.534

Length

507 amino acids

Sequence
(BLAST)

001: MDLTTDAVGR SRKLLTGWDM RTPFNFENDG LVLDRDAVES MEFMELDSPD LVRKLLPSNP SVGFLSGEIG RNSSKRIVSP TNMVTSNPIF GGEESSSRLS
101: SSFMESNSQD SSIIDLKLGR LADCIDAKNN RCSKEGSVLS SLASSMPAKR ARTTSVCSQT PLCQVHGCNM DLSSSKDYHK RHKVCDVHSK TPKVIVNGIE
201: QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPQLD THSGKPQKLL QSYPGTRILG TSLAKRPPFV FQDILPGSVY CPDGYGQANP SRSIKLEKEP
301: IYSSQLVIPI SGQLPPKSFL HLYGTERQCP PGFLSSGTED CTGFYPASTV QELPGVSKSN CALSLLSAQS QDLSNHLMGI PMANPPTVQG CHAHYSAVHN
401: SDKPIGMSSL EKFASNGSYS SRMNSVEVAQ MGPVMLPDGG NAVSFEVRTN RNFQGSDFLN AKYSHSSERE PTVDLLQLSS HLKRVEWQRN YMHVKQENDD
501: FHCFPTT

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.